Chlorine in PDB 7p3a: N-Terminal Domain of Cgi-99

The structure of N-Terminal Domain of Cgi-99, PDB code: 7p3a was solved by A.Kroupova, M.Jinek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.86 / 2.00
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	91.714, 91.714, 52.942, 90, 90, 120
R / Rfree (%)	19.7 / 22.4

The binding sites of Chlorine atom in the N-Terminal Domain of Cgi-99 (pdb code 7p3a). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the N-Terminal Domain of Cgi-99, PDB code: 7p3a:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the N-Terminal Domain of Cgi-99


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of N-Terminal Domain of Cgi-99 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl205 b:36.9 occ:1.00 HH11 A:ARG76 2.5 44.2 1.0 HG21 A:ILE73 2.8 70.1 1.0 HZ3 A:TRP56 2.9 30.3 1.0 HG23 A:ILE73 3.1 70.1 1.0 HD2 A:PHE60 3.1 33.7 1.0 O A:HOH309 3.1 33.0 1.0 O A:HOH316 3.2 35.5 1.0 NH1 A:ARG76 3.3 36.9 1.0 HD13 A:ILE73 3.3 59.8 1.0 HE2 A:PHE25 3.4 39.9 1.0 CG2 A:ILE73 3.4 58.4 1.0 HB3 A:PRO57 3.5 41.6 1.0 HH12 A:ARG76 3.5 44.2 1.0 HG3 A:PRO57 3.5 36.5 1.0 HA A:PRO57 3.6 34.3 1.0 O A:HOH361 3.6 56.0 1.0 CZ3 A:TRP56 3.7 25.3 1.0 HG22 A:ILE73 3.8 70.1 1.0 HE3 A:TRP56 3.9 32.4 1.0 CD2 A:PHE60 3.9 28.1 1.0 HE A:ARG76 4.1 43.3 1.0 CB A:PRO57 4.1 34.7 1.0 CD1 A:ILE73 4.2 49.8 1.0 CE3 A:TRP56 4.2 27.0 1.0 HE2 A:PHE60 4.2 33.8 1.0 CE2 A:PHE25 4.3 33.3 1.0 CG A:PRO57 4.3 30.4 1.0 HB3 A:PHE60 4.3 30.9 1.0 CA A:PRO57 4.3 28.6 1.0 CZ A:ARG76 4.4 39.4 1.0 HD11 A:ILE73 4.5 59.8 1.0 CE2 A:PHE60 4.5 28.1 1.0 HG12 A:ILE73 4.5 48.9 1.0 HE A:ARG26 4.6 31.2 1.0 CB A:ILE73 4.6 47.0 1.0 HH21 A:ARG26 4.7 28.3 1.0 NE A:ARG76 4.7 36.1 1.0 CG1 A:ILE73 4.7 40.8 1.0 HZ A:PHE25 4.8 34.1 1.0 CG A:PHE60 4.8 25.9 1.0 OE1 A:GLU22 4.8 34.6 1.0 CH2 A:TRP56 4.8 26.7 1.0 HG2 A:PRO57 4.9 36.5 1.0 HD12 A:ILE73 4.9 59.8 1.0 HB2 A:PHE60 4.9 30.9 1.0 HH2 A:TRP56 4.9 32.1 1.0 CB A:PHE60 4.9 25.8 1.0 HD2 A:PHE25 5.0 40.8 1.0

Chlorine binding site 2 out of 2 in the N-Terminal Domain of Cgi-99


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of N-Terminal Domain of Cgi-99 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl205 b:29.9 occ:1.00 HH11 B:ARG76 2.6 43.9 1.0 HZ3 B:TRP56 3.0 25.7 1.0 O B:HOH317 3.1 29.9 1.0 HD2 B:PHE60 3.2 25.3 1.0 HB B:ILE73 3.2 37.5 1.0 HB3 B:PRO57 3.2 31.7 1.0 NH1 B:ARG76 3.3 36.6 1.0 HD12 B:ILE73 3.3 43.2 1.0 O B:HOH301 3.4 44.8 1.0 HG3 B:PRO57 3.5 36.5 1.0 HH12 B:ARG76 3.5 43.9 1.0 HA B:PRO57 3.5 28.8 1.0 HE2 B:PHE25 3.7 36.0 1.0 CZ3 B:TRP56 3.8 21.4 1.0 HE3 B:TRP56 3.9 26.9 1.0 CB B:PRO57 4.0 26.4 1.0 CD2 B:PHE60 4.0 21.1 1.0 CB B:ILE73 4.1 31.2 1.0 CG B:PRO57 4.2 30.4 1.0 HE B:ARG76 4.2 41.5 1.0 HG21 B:ILE73 4.2 34.0 1.0 CA B:PRO57 4.2 24.0 1.0 CD1 B:ILE73 4.2 36.0 1.0 HB3 B:PHE60 4.2 25.5 1.0 CE3 B:TRP56 4.3 22.4 1.0 CZ B:ARG76 4.4 34.7 1.0 HE2 B:PHE60 4.5 24.3 1.0 HD13 B:ILE73 4.5 43.2 1.0 CE2 B:PHE25 4.6 30.0 1.0 CG2 B:ILE73 4.6 28.4 1.0 CG1 B:ILE73 4.6 34.9 1.0 NE B:ARG76 4.7 34.6 1.0 HH21 B:ARG26 4.7 32.2 1.0 HG2 B:PRO57 4.7 36.5 1.0 CE2 B:PHE60 4.7 20.2 1.0 HG13 B:ILE73 4.8 41.9 1.0 HB2 B:PRO57 4.8 31.7 1.0 HG22 B:ILE73 4.8 34.0 1.0 O B:ILE73 4.9 31.1 1.0 HD11 B:ILE73 4.9 43.2 1.0 CH2 B:TRP56 4.9 23.8 1.0 CB B:PHE60 4.9 21.3 1.0 CG B:PHE60 4.9 21.9 1.0 HE B:ARG26 5.0 29.4 1.0 HH2 B:TRP56 5.0 28.6 1.0 HB2 B:PHE60 5.0 25.5 1.0

A.Kroupova, F.Ackle, I.Asanovic, S.Weitzer, F.M.Boneberg, M.Faini, A.Leitner, A.Chui, R.Aebersold, J.Martinez, M.Jinek. Molecular Architecture of the Human Trna Ligase Complex. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34854379
DOI: 10.7554/ELIFE.71656