Chlorine in PDB 7p8g: Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form

Enzymatic activity of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form

All present enzymatic activity of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form:
2.4.1.266;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form, PDB code: 7p8g was solved by A.Silva, D.Nunes-Costa, P.J.Babosa Pereira, S.Macedo-Ribeiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.60 / 2.13
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 101.423, 101.423, 122.625, 90, 90, 90
R / Rfree (%) 20.5 / 22.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form (pdb code 7p8g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form, PDB code: 7p8g:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7p8g

Go back to Chlorine Binding Sites List in 7p8g
Chlorine binding site 1 out of 4 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:45.6
occ:1.00
 O A:HOH539 3.2 43.0 1.0
N A:ALA106 3.5 47.9 1.0
CB A:ALA106 3.8 47.0 1.0
CG1 A:VAL105 4.0 45.1 1.0
CA A:ALA106 4.2 48.8 1.0
O A:ALA106 4.3 53.1 1.0
C A:VAL105 4.4 50.9 1.0
CA A:VAL105 4.5 46.8 1.0
C A:ALA106 4.8 49.4 1.0
CB A:VAL105 4.9 47.6 1.0

Chlorine binding site 2 out of 4 in 7p8g

Go back to Chlorine Binding Sites List in 7p8g
Chlorine binding site 2 out of 4 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:81.5
occ:1.00
 NH2 A:ARG236 3.3 73.6 1.0
CG A:GLU212 3.6 67.3 1.0
N A:LEU213 3.7 51.4 1.0
CA A:LEU213 3.7 52.6 1.0
CD A:GLU212 3.9 74.5 1.0
C A:GLU212 4.0 55.8 1.0
CB A:GLU212 4.1 62.5 1.0
CB A:LEU213 4.1 53.2 1.0
OE2 A:GLU212 4.1 78.6 1.0
O A:GLU212 4.2 50.0 1.0
CD1 A:LEU237 4.4 55.6 1.0
OE1 A:GLU212 4.4 76.4 1.0
CD2 A:LEU237 4.5 48.0 1.0
CD1 A:LEU213 4.6 52.5 1.0
OG A:SER216 4.6 53.4 1.0
CZ A:ARG236 4.7 66.7 1.0
CA A:GLU212 4.7 60.3 1.0
ND1 A:HIS156 4.7 61.1 1.0
CE1 A:HIS156 4.9 63.8 1.0
CG A:LEU237 5.0 56.5 1.0

Chlorine binding site 3 out of 4 in 7p8g

Go back to Chlorine Binding Sites List in 7p8g
Chlorine binding site 3 out of 4 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:59.0
occ:1.00
 OG1 A:THR181 3.1 55.7 1.0
N A:THR181 3.5 52.1 1.0
O1 A:BGC402 3.5 59.3 0.8
CA A:GLY178 3.7 66.5 1.0
NH2 A:ARG255 3.8 83.1 1.0
CB A:THR181 3.8 56.1 1.0
C A:GLY178 3.9 60.3 1.0
CB A:VAL180 4.0 49.7 1.0
N A:VAL180 4.0 49.9 1.0
CA A:THR181 4.2 52.2 1.0
CD1 A:LEU203 4.3 50.8 1.0
N A:ARG179 4.3 54.6 1.0
O A:GLY178 4.3 56.7 1.0
NE2 A:HIS252 4.3 92.6 1.0
CA A:VAL180 4.3 52.6 1.0
C A:VAL180 4.3 53.8 1.0
CE1 A:HIS252 4.4 89.8 1.0
CE A:MET263 4.4 65.8 1.0
O A:HOH560 4.4 61.3 1.0
C1 A:BGC402 4.5 64.1 0.8
CG2 A:VAL180 4.7 46.8 1.0
O A:HOH577 4.8 52.4 1.0
O A:HOH503 4.9 50.2 1.0
C A:ARG179 5.0 51.6 1.0

Chlorine binding site 4 out of 4 in 7p8g

Go back to Chlorine Binding Sites List in 7p8g
Chlorine binding site 4 out of 4 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 - Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:71.3
occ:1.00
 NH1 A:ARG98 3.0 48.2 1.0
NH2 A:ARG98 3.5 52.6 1.0
CZ A:ARG98 3.7 47.8 1.0
N A:PRO109 3.7 54.4 1.0
O A:HOH578 3.8 60.1 1.0
CA A:PRO109 3.8 51.3 1.0
C A:GLN108 3.9 53.8 1.0
CD A:PRO109 4.0 57.5 1.0
CB A:PRO109 4.0 51.7 1.0
O A:GLN108 4.1 48.9 1.0
O A:PRO107 4.2 54.5 1.0
O A:HOH533 4.4 60.5 1.0
CG A:PRO109 4.5 56.9 1.0
C A:PRO107 4.5 49.7 1.0
CA A:GLN108 4.6 53.7 1.0
CB A:PRO107 4.6 49.8 1.0
N A:GLN108 4.9 53.1 1.0
O A:HOH506 4.9 46.0 1.0
NE A:ARG98 4.9 46.3 1.0
O A:HOH559 5.0 49.5 1.0

Reference:

A.Silva, D.Nunes-Costa, N.Empadinhas, P.J.Barbosa Pereira, S.Macedo-Ribeiro. Crystal Structure of Mycobacterium Hassiacum Glucosyl-3-Phosphoglycerate Synthase at pH 5.5 - Apo Form To Be Published.
Page generated: Tue Jul 30 02:20:10 2024

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