Chlorine in PDB 7pdo: Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp

Enzymatic activity of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp

All present enzymatic activity of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp:
2.4.1.266;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp, PDB code: 7pdo was solved by A.Silva, D.Nunes-Costa, P.J.Babosa Pereira, S.Macedo-Ribeiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.57 / 1.97
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 101.338, 101.338, 122.532, 90, 90, 90
R / Rfree (%) 18.2 / 19.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp (pdb code 7pdo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp, PDB code: 7pdo:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7pdo

Go back to Chlorine Binding Sites List in 7pdo
Chlorine binding site 1 out of 4 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:38.6
occ:1.00
 O A:HOH522 3.2 40.7 1.0
O A:HOH574 3.3 35.5 1.0
CD A:ARG87 3.5 37.5 1.0
CG A:ARG87 3.5 38.2 1.0
CB A:ARG87 3.8 37.6 1.0
NE A:ARG87 3.9 39.7 1.0
NH1 A:ARG87 4.0 42.6 1.0
CZ A:ARG87 4.1 43.6 1.0
O A:HOH515 4.3 39.8 1.0
O A:GLU52 4.5 38.7 1.0
CA A:ARG87 4.6 40.0 1.0
O A:HOH575 4.8 40.7 1.0
O A:ARG87 5.0 38.5 1.0

Chlorine binding site 2 out of 4 in 7pdo

Go back to Chlorine Binding Sites List in 7pdo
Chlorine binding site 2 out of 4 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:50.5
occ:0.88
 O A:HOH603 2.9 57.6 1.0
OG1 A:THR181 3.1 47.5 1.0
N A:THR181 3.3 44.2 1.0
CB A:THR181 3.7 50.0 1.0
CA A:GLY178 3.8 71.6 1.0
N A:VAL180 3.9 39.2 1.0
C A:GLY178 3.9 57.6 1.0
NH2 A:ARG255 3.9 97.0 1.0
CB A:VAL180 3.9 42.5 1.0
CA A:THR181 4.1 43.5 1.0
N A:ARG179 4.2 52.6 1.0
C A:VAL180 4.2 45.7 1.0
CA A:VAL180 4.2 45.7 1.0
O A:GLY178 4.3 50.7 1.0
CD1 A:LEU203 4.4 38.3 1.0
CG2 A:VAL180 4.7 44.7 1.0
C A:ARG179 4.8 44.9 1.0
CE1 A:HIS252 4.9 122.5 1.0
CG1 A:VAL180 4.9 40.0 1.0
CE A:MET263 4.9 46.3 1.0

Chlorine binding site 3 out of 4 in 7pdo

Go back to Chlorine Binding Sites List in 7pdo
Chlorine binding site 3 out of 4 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:63.8
occ:1.00
 NH1 A:ARG98 3.3 40.8 1.0
N A:PRO109 3.5 40.6 1.0
C A:GLN108 3.7 40.0 1.0
CG A:PRO109 3.8 47.8 1.0
CA A:PRO109 3.8 43.0 1.0
NH2 A:ARG98 3.9 43.6 1.0
CD A:PRO109 3.9 43.4 1.0
O A:PRO107 3.9 42.2 1.0
O A:GLN108 4.0 40.4 1.0
CZ A:ARG98 4.0 42.4 1.0
O A:HOH651 4.1 54.2 1.0
CB A:PRO109 4.1 43.6 1.0
C A:PRO107 4.2 43.5 1.0
CA A:GLN108 4.3 41.6 1.0
N A:GLN108 4.5 43.7 1.0
CB A:PRO107 4.5 42.9 1.0
O A:HOH533 4.7 55.2 1.0
O A:HOH507 5.0 39.7 1.0
CG A:PRO107 5.0 47.4 1.0

Chlorine binding site 4 out of 4 in 7pdo

Go back to Chlorine Binding Sites List in 7pdo
Chlorine binding site 4 out of 4 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 5.5 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:78.2
occ:1.00
 NH1 A:ARG236 3.0 66.8 1.0
NH2 A:ARG236 3.7 66.0 1.0
CZ A:ARG236 3.8 62.7 1.0
CA A:LEU213 3.8 45.2 1.0
CG A:GLU212 4.0 63.3 1.0
OG A:SER216 4.0 52.8 1.0
N A:LEU213 4.1 47.9 1.0
O A:GLU212 4.2 46.2 1.0
CD2 A:LEU237 4.3 51.6 1.0
C A:GLU212 4.3 51.0 1.0
CB A:LEU213 4.3 45.9 1.0
OE2 A:GLU212 4.5 81.2 1.0
CD1 A:LEU213 4.5 41.6 1.0
CD1 A:LEU237 4.5 51.4 1.0
CD A:GLU212 4.5 72.0 1.0
CG A:LEU237 4.8 48.9 1.0
CB A:GLU212 4.9 53.1 1.0

Reference:

A.Silva, D.Nunes-Costa, N.Empadinhas, P.J.Babosa Pereira, S.Macedo-Ribeiro. Crystal Structure of Mycobacterium Hassiacum Glucosyl-3-Phosphoglycerate Synthase at pH 5.5 in Complex with Udp To Be Published.
Page generated: Tue Jul 30 02:21:50 2024

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