Chlorine in PDB 7pf1: Uvc Treated Human Apoferritin

Other elements in 7pf1:

The structure of Uvc Treated Human Apoferritin also contains other interesting chemical elements:

Magnesium (Mg) 167 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 96;

Binding sites:

The binding sites of Chlorine atom in the Uvc Treated Human Apoferritin (pdb code 7pf1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 96 binding sites of Chlorine where determined in the Uvc Treated Human Apoferritin, PDB code: 7pf1:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 96 in 7pf1

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Chlorine binding site 1 out of 96 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:23.3
occ:1.00
 O A:HOH503 2.9 53.8 1.0
O A:HOH514 3.2 41.4 1.0
O A:HOH480 3.3 46.8 1.0
N A:TYR15 3.3 14.0 1.0
O A:TYR15 3.4 14.5 1.0
N A:ASN14 3.5 15.6 1.0
NE A:ARG12 3.7 19.7 1.0
CG A:ARG12 3.7 17.5 1.0
CD A:ARG12 3.7 20.7 1.0
O A:HOH450 3.9 24.9 1.0
C A:GLN13 3.9 14.8 1.0
C A:TYR15 4.0 14.4 1.0
CA A:GLN13 4.0 15.2 1.0
O A:HOH575 4.1 52.6 1.0
CA A:TYR15 4.1 14.1 1.0
N A:GLN13 4.1 14.4 1.0
CA A:ASN14 4.1 15.3 1.0
C A:ASN14 4.2 13.9 1.0
C A:ARG12 4.4 16.2 1.0
CB A:TYR15 4.4 14.6 1.0
CB A:ARG12 4.5 15.7 1.0
O A:ARG12 4.6 15.8 1.0
O A:GLN13 4.8 13.7 1.0
CZ A:ARG12 4.9 19.1 1.0

Chlorine binding site 2 out of 96 in 7pf1

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Chlorine binding site 2 out of 96 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:26.6
occ:1.00
 O Q:HOH477 2.8 47.2 1.0
O Q:HOH460 3.1 56.1 1.0
NE2 Q:GLN78 3.2 19.1 1.0
O Q:HOH499 3.2 35.7 1.0
ND2 A:ASN142 3.3 18.1 1.0
O A:HOH477 3.6 36.9 1.0
CD A:LYS146 3.8 24.3 1.0
O A:HOH354 3.9 22.9 1.0
O Q:HOH504 3.9 34.1 1.0
NZ Q:LYS74 4.0 22.7 1.0
OD1 A:ASN142 4.1 17.2 1.0
CG A:ASN142 4.1 19.2 1.0
CG A:LYS146 4.1 19.6 1.0
CD Q:GLN78 4.2 16.4 1.0
O Q:HOH489 4.2 34.6 1.0
OE1 Q:GLN78 4.3 14.8 1.0
CE Q:LYS74 4.4 22.6 1.0
O Q:HOH544 4.4 50.2 1.0
O Q:HOH445 4.6 16.0 1.0
O Q:HOH488 4.9 67.1 1.0
CE A:LYS146 4.9 31.2 1.0

Chlorine binding site 3 out of 96 in 7pf1

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Chlorine binding site 3 out of 96 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:31.2
occ:1.00
 O A:HOH480 3.0 46.8 1.0
N A:GLN17 3.2 15.9 1.0
O A:HOH457 3.3 51.1 1.0
CG A:GLN17 3.6 20.0 1.0
CD2 A:HIS16 3.8 18.7 1.0
CG A:HIS16 3.8 17.6 1.0
CA A:HIS16 3.8 15.7 1.0
NE2 A:HIS16 3.9 19.3 1.0
CB A:GLN17 3.9 17.2 1.0
CE1 A:HIS16 3.9 19.5 1.0
O A:HOH514 3.9 41.4 1.0
ND1 A:HIS16 3.9 18.1 1.0
C A:HIS16 4.0 16.0 1.0
O A:HOH518 4.1 40.8 1.0
CA A:GLN17 4.1 16.4 1.0
CD A:GLN17 4.2 23.7 1.0
OE1 A:GLN17 4.2 28.0 1.0
CB A:HIS16 4.4 16.0 1.0
O A:TYR15 4.6 14.5 1.0
N A:HIS16 5.0 14.2 1.0

Chlorine binding site 4 out of 96 in 7pf1

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Chlorine binding site 4 out of 96 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:26.5
occ:1.00
 NE2 A:GLN86 2.7 26.8 1.0
N A:ASP87 3.1 13.7 1.0
OD1 A:ASP87 3.5 14.4 1.0
CG A:ASP87 3.5 15.4 1.0
CB A:GLN86 3.7 16.9 1.0
CA A:GLN86 3.7 15.0 1.0
CD A:GLN86 3.9 30.4 1.0
OD2 A:ASP87 3.9 15.0 1.0
C A:GLN86 3.9 13.2 1.0
CB A:ASP87 4.0 13.0 1.0
CD W:LYS90 4.0 21.9 1.0
O A:HOH500 4.1 53.8 1.0
CA A:ASP87 4.1 12.3 1.0
CG A:GLN86 4.3 21.7 1.0
O A:HOH317 4.4 17.2 1.0
O W:HOH591 4.5 23.6 1.0
CE W:LYS90 4.5 29.6 1.0
O A:HOH308 4.6 18.4 1.0
CG W:LYS90 4.6 18.2 1.0
MG A:MG213 4.7 19.2 1.0
NZ W:LYS90 4.8 35.5 1.0
O A:HOH346 4.9 17.8 1.0
OE1 A:GLN86 4.9 38.1 1.0
CB W:LYS90 5.0 16.8 1.0

Chlorine binding site 5 out of 96 in 7pf1

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Chlorine binding site 5 out of 96 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:26.6
occ:1.00
 O A:HOH478 2.8 47.2 1.0
O A:HOH460 3.1 56.1 1.0
NE2 A:GLN78 3.2 19.1 1.0
O A:HOH499 3.2 35.7 1.0
ND2 J:ASN142 3.3 18.1 1.0
O J:HOH475 3.6 36.9 1.0
CD J:LYS146 3.8 24.3 1.0
O J:HOH352 3.9 22.9 1.0
O A:HOH504 3.9 34.1 1.0
NZ A:LYS74 4.0 22.7 1.0
OD1 J:ASN142 4.1 17.2 1.0
CG J:ASN142 4.1 19.2 1.0
CG J:LYS146 4.1 19.6 1.0
CD A:GLN78 4.2 16.4 1.0
O A:HOH489 4.2 34.6 1.0
OE1 A:GLN78 4.3 14.8 1.0
CE A:LYS74 4.4 22.6 1.0
O A:HOH545 4.4 50.2 1.0
O A:HOH445 4.6 16.0 1.0
O A:HOH488 4.9 67.1 1.0
CE J:LYS146 4.9 31.2 1.0

Chlorine binding site 6 out of 96 in 7pf1

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Chlorine binding site 6 out of 96 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:23.3
occ:1.00
 O B:HOH504 2.9 53.8 1.0
O B:HOH514 3.2 41.4 1.0
O B:HOH482 3.3 46.8 1.0
N B:TYR15 3.3 14.0 1.0
O B:TYR15 3.4 14.5 1.0
N B:ASN14 3.5 15.6 1.0
NE B:ARG12 3.7 19.7 1.0
CG B:ARG12 3.7 17.5 1.0
CD B:ARG12 3.7 20.7 1.0
O B:HOH452 3.9 24.9 1.0
C B:GLN13 3.9 14.8 1.0
C B:TYR15 4.0 14.4 1.0
CA B:GLN13 4.0 15.2 1.0
O B:HOH571 4.1 52.6 1.0
CA B:TYR15 4.1 14.1 1.0
N B:GLN13 4.1 14.4 1.0
CA B:ASN14 4.1 15.3 1.0
C B:ASN14 4.2 13.9 1.0
C B:ARG12 4.4 16.2 1.0
CB B:TYR15 4.4 14.6 1.0
CB B:ARG12 4.5 15.7 1.0
O B:ARG12 4.6 15.8 1.0
O B:GLN13 4.8 13.7 1.0
CZ B:ARG12 4.9 19.1 1.0

Chlorine binding site 7 out of 96 in 7pf1

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Chlorine binding site 7 out of 96 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:26.6
occ:1.00
 O K:HOH474 2.8 47.2 1.0
O K:HOH458 3.1 56.1 1.0
NE2 K:GLN78 3.2 19.1 1.0
O K:HOH496 3.2 35.7 1.0
ND2 B:ASN142 3.3 18.1 1.0
O B:HOH479 3.6 36.9 1.0
CD B:LYS146 3.8 24.3 1.0
O B:HOH354 3.9 22.9 1.0
O K:HOH501 3.9 34.1 1.0
NZ K:LYS74 4.0 22.7 1.0
OD1 B:ASN142 4.1 17.2 1.0
CG B:ASN142 4.1 19.2 1.0
CG B:LYS146 4.1 19.6 1.0
CD K:GLN78 4.2 16.4 1.0
O K:HOH486 4.2 34.6 1.0
OE1 K:GLN78 4.3 14.8 1.0
CE K:LYS74 4.4 22.6 1.0
O K:HOH541 4.4 50.2 1.0
O K:HOH444 4.6 16.0 1.0
O K:HOH485 4.9 67.1 1.0
CE B:LYS146 4.9 31.2 1.0

Chlorine binding site 8 out of 96 in 7pf1

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Chlorine binding site 8 out of 96 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:31.2
occ:1.00
 O B:HOH482 3.0 46.8 1.0
N B:GLN17 3.2 15.9 1.0
O B:HOH458 3.3 51.1 1.0
CG B:GLN17 3.6 20.0 1.0
CD2 B:HIS16 3.8 18.7 1.0
CG B:HIS16 3.8 17.6 1.0
CA B:HIS16 3.8 15.7 1.0
NE2 B:HIS16 3.9 19.3 1.0
CB B:GLN17 3.9 17.2 1.0
CE1 B:HIS16 3.9 19.5 1.0
O B:HOH514 3.9 41.4 1.0
ND1 B:HIS16 3.9 18.1 1.0
C B:HIS16 4.0 16.0 1.0
O B:HOH518 4.1 40.8 1.0
CA B:GLN17 4.1 16.4 1.0
CD B:GLN17 4.2 23.7 1.0
OE1 B:GLN17 4.2 28.0 1.0
CB B:HIS16 4.4 16.0 1.0
O B:TYR15 4.6 14.5 1.0
N B:HIS16 5.0 14.2 1.0

Chlorine binding site 9 out of 96 in 7pf1

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Chlorine binding site 9 out of 96 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl204

b:26.5
occ:1.00
 NE2 B:GLN86 2.7 26.8 1.0
N B:ASP87 3.1 13.7 1.0
OD1 B:ASP87 3.5 14.4 1.0
CG B:ASP87 3.5 15.4 1.0
CB B:GLN86 3.7 16.9 1.0
CA B:GLN86 3.7 15.0 1.0
CD B:GLN86 3.9 30.4 1.0
OD2 B:ASP87 3.9 15.0 1.0
C B:GLN86 3.9 13.2 1.0
CB B:ASP87 4.0 13.0 1.0
CD V:LYS90 4.0 21.9 1.0
O B:HOH501 4.1 53.8 1.0
CA B:ASP87 4.1 12.3 1.0
CG B:GLN86 4.3 21.7 1.0
O B:HOH317 4.4 17.2 1.0
O V:HOH590 4.5 23.6 1.0
CE V:LYS90 4.5 29.6 1.0
O B:HOH308 4.6 18.4 1.0
CG V:LYS90 4.6 18.2 1.0
MG B:MG213 4.7 19.2 1.0
NZ V:LYS90 4.8 35.5 1.0
O B:HOH347 4.9 17.8 1.0
OE1 B:GLN86 4.9 38.1 1.0
CB V:LYS90 5.0 16.8 1.0

Chlorine binding site 10 out of 96 in 7pf1

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Chlorine binding site 10 out of 96 in the Uvc Treated Human Apoferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Uvc Treated Human Apoferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl212

b:26.6
occ:1.00
 O B:HOH478 2.8 47.2 1.0
O B:HOH461 3.1 56.1 1.0
NE2 B:GLN78 3.2 19.1 1.0
O B:HOH500 3.2 35.7 1.0
ND2 R:ASN142 3.3 18.1 1.0
O R:HOH473 3.6 36.9 1.0
CD R:LYS146 3.8 24.3 1.0
O R:HOH353 3.9 22.9 1.0
O B:HOH505 3.9 34.1 1.0
NZ B:LYS74 4.0 22.7 1.0
OD1 R:ASN142 4.1 17.2 1.0
CG R:ASN142 4.1 19.2 1.0
CG R:LYS146 4.1 19.6 1.0
CD B:GLN78 4.2 16.4 1.0
O B:HOH490 4.2 34.6 1.0
OE1 B:GLN78 4.3 14.8 1.0
CE B:LYS74 4.4 22.6 1.0
O B:HOH544 4.4 50.2 1.0
O B:HOH446 4.6 16.0 1.0
O B:HOH489 4.9 67.1 1.0
CE R:LYS146 4.9 31.2 1.0

Reference:

J.S.Depelteau, L.Renault, N.Althof, C.K.Cassidy, L.M.Mendonca, G.J.Jensen, G.P.Resch, A.Briegel. Uvc Inactivation of Pathogenic Samples Suitable For Cryo-Em Analysis. Commun Biol V. 5 29 2022.
ISSN: ESSN 2399-3642
PubMed: 35017666
DOI: 10.1038/S42003-021-02962-W
Page generated: Tue Jul 30 02:22:32 2024

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