Chlorine in PDB 7pxl: X-Ray Structure of Lpmo at 3.6X10^5 Gy

Enzymatic activity of X-Ray Structure of Lpmo at 3.6X10^5 Gy

All present enzymatic activity of X-Ray Structure of Lpmo at 3.6X10^5 Gy:
1.14.99.56;

Protein crystallography data

The structure of X-Ray Structure of Lpmo at 3.6X10^5 Gy, PDB code: 7pxl was solved by T.Tandrup, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.24 / 1.35
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 125.03, 125.03, 125.03, 90, 90, 90
R / Rfree (%) 18.7 / 20

Other elements in 7pxl:

The structure of X-Ray Structure of Lpmo at 3.6X10^5 Gy also contains other interesting chemical elements:

Copper (Cu) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of Lpmo at 3.6X10^5 Gy (pdb code 7pxl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the X-Ray Structure of Lpmo at 3.6X10^5 Gy, PDB code: 7pxl:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7pxl

Go back to Chlorine Binding Sites List in 7pxl
Chlorine binding site 1 out of 3 in the X-Ray Structure of Lpmo at 3.6X10^5 Gy


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of Lpmo at 3.6X10^5 Gy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:67.9
occ:1.00
ND2 A:ASN27 3.3 13.5 1.0
O A:HOH580 3.7 25.9 1.0
ND2 A:ASN29 3.9 18.4 1.0
CG A:ASN27 4.3 13.1 1.0
O A:HOH497 4.4 14.2 1.0
OD1 A:ASN27 4.5 13.7 1.0
CG A:ASN29 5.0 14.8 1.0

Chlorine binding site 2 out of 3 in 7pxl

Go back to Chlorine Binding Sites List in 7pxl
Chlorine binding site 2 out of 3 in the X-Ray Structure of Lpmo at 3.6X10^5 Gy


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of Lpmo at 3.6X10^5 Gy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:25.2
occ:1.00
O A:HOH551 3.2 30.4 1.0
N A:GLN228 3.3 17.1 1.0
O A:HOH505 3.4 24.6 1.0
CA A:ALA121 3.6 16.8 1.0
CA A:ALA227 3.8 17.6 1.0
CB A:ALA121 3.8 17.4 1.0
CB A:GLN228 4.0 17.6 1.0
O A:THR120 4.0 19.8 1.0
C A:ALA227 4.1 16.8 1.0
N A:ALA121 4.1 17.8 1.0
C A:THR120 4.2 18.9 1.0
CA A:GLN228 4.3 15.9 1.0
CB A:ALA227 4.5 18.9 1.0
CG2 A:THR120 4.5 22.4 1.0
C A:ALA121 4.8 16.4 1.0
O A:HOH687 4.9 38.1 1.0
N A:ALA227 4.9 17.9 1.0

Chlorine binding site 3 out of 3 in 7pxl

Go back to Chlorine Binding Sites List in 7pxl
Chlorine binding site 3 out of 3 in the X-Ray Structure of Lpmo at 3.6X10^5 Gy


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Structure of Lpmo at 3.6X10^5 Gy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:22.1
occ:1.00
O A:SER175 1.8 15.2 0.2
C A:SER175 2.7 16.8 0.2
O A:HOH514 3.1 23.7 1.0
ND1 A:HIS131 3.1 24.0 1.0
CA A:SER175 3.2 15.8 0.2
N A:ASP176 3.3 13.0 0.8
CG A:ASP176 3.5 19.2 0.8
CG A:ASP176 3.6 19.7 0.2
CE1 A:HIS131 3.6 25.1 1.0
OD1 A:ASP176 3.6 16.0 0.8
OD1 A:ASP176 3.7 21.2 0.2
CA A:SER175 3.7 14.6 0.8
CB A:ASP176 3.8 20.1 0.2
OD2 A:ASP176 3.8 19.4 0.8
CB A:ASP176 3.9 17.0 0.8
OG A:SER175 3.9 14.2 0.2
CB A:ALA56 3.9 14.2 1.0
N A:ASP176 3.9 18.1 0.2
OD2 A:ASP176 4.0 22.0 0.2
C A:SER175 4.0 13.8 0.8
CB A:SER175 4.1 14.9 0.2
CA A:ASP176 4.2 16.3 0.8
N A:SER175 4.2 16.1 0.2
O A:HOH509 4.3 20.9 1.0
CG A:HIS131 4.4 20.9 1.0
CA A:ASP176 4.5 19.3 0.2
OG A:SER175 4.6 12.9 0.8
N A:SER175 4.6 15.1 0.8
CB A:SER175 4.7 13.8 0.8
O A:SER174 4.7 16.5 1.0
C A:SER174 4.9 16.5 1.0
NE2 A:HIS131 4.9 29.8 1.0
CB A:HIS131 4.9 17.2 1.0
O A:HOH625 5.0 26.3 1.0

Reference:

T.Tandrup, S.J.Muderspach, S.Banerjee, G.Santoni, J.O.Ipsen, C.Hernandez-Rollan, M.H.H.Norholm, K.S.Johansen, F.Meilleur, L.Lo Leggio. Changes in Active-Site Geometry on X-Ray Photoreduction of A Lytic Polysaccharide Monooxygenase Active-Site Copper and Saccharide Binding. Iucrj V. 9 666 2022.
ISSN: ESSN 2052-2525
PubMed: 36071795
DOI: 10.1107/S2052252522007175
Page generated: Tue Apr 4 21:17:40 2023

Last articles

Cl in 4NHT
Cl in 4NO7
Cl in 4NML
Cl in 4NN3
Cl in 4NMW
Cl in 4NM7
Cl in 4NM5
Cl in 4NM3
Cl in 4NM0
Cl in 4NHQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy