Chlorine in PDB 7pzz: Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2)

Enzymatic activity of Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2)

All present enzymatic activity of Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2):
2.1.2.1;

Protein crystallography data

The structure of Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2), PDB code: 7pzz was solved by M.Ruszkowski, B.Sekula, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.84 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 115.201, 131.236, 151.389, 90, 90, 90
R / Rfree (%) 15.8 / 17.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2) (pdb code 7pzz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2), PDB code: 7pzz:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7pzz

Go back to Chlorine Binding Sites List in 7pzz
Chlorine binding site 1 out of 4 in the Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl607

b:27.2
occ:1.00
 NH1 A:ARG430 2.9 37.2 1.0
OG A:SER82 3.2 18.7 1.0
CD A:PRO81 3.5 16.7 1.0
CD A:ARG430 3.5 29.1 1.0
CG A:PRO81 3.6 21.9 1.0
N A:SER82 3.6 15.1 1.0
CB A:SER82 3.6 16.6 1.0
CZ A:ARG430 3.7 37.4 1.0
CE1 A:HIS260 3.7 19.3 1.0
NE2 A:HIS260 3.9 17.1 1.0
CG2 A:ILE80 3.9 16.9 1.0
NE A:ARG430 3.9 38.1 1.0
CE1 B:TYR112 4.0 38.0 1.0
N A:PRO81 4.0 15.1 1.0
OD1 A:ASN413 4.1 33.3 1.0
CA A:SER82 4.2 14.6 1.0
ND2 A:ASN413 4.3 41.3 1.0
OH B:TYR112 4.3 36.5 1.0
C A:PRO81 4.4 15.4 1.0
CG A:ASN413 4.5 37.6 1.0
CB A:PRO81 4.5 20.4 1.0
CA A:PRO81 4.5 14.3 1.0
CZ B:TYR112 4.7 34.4 1.0
O B:HOH900 4.7 27.4 1.0
C A:ILE80 4.7 14.4 1.0
NH2 A:ARG430 4.7 39.1 1.0
CG A:ARG430 4.8 26.3 1.0
CD1 B:TYR112 5.0 36.9 1.0

Chlorine binding site 2 out of 4 in 7pzz

Go back to Chlorine Binding Sites List in 7pzz
Chlorine binding site 2 out of 4 in the Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl608

b:27.9
occ:1.00
 OG B:SER82 3.2 21.1 1.0
NE B:ARG430 3.3 42.6 1.0
N B:SER82 3.6 16.0 1.0
NH2 B:ARG430 3.6 50.7 1.0
CG B:PRO81 3.6 23.6 1.0
CB B:SER82 3.6 18.9 1.0
ND2 B:ASN413 3.7 49.7 1.0
CD B:PRO81 3.7 20.8 1.0
CE1 B:HIS260 3.8 20.8 1.0
CZ B:ARG430 3.8 45.9 1.0
CG2 B:ILE80 3.9 21.4 1.0
NE2 B:HIS260 4.0 19.8 1.0
N B:PRO81 4.0 17.9 1.0
CA B:SER82 4.2 14.8 1.0
CD B:ARG430 4.2 32.5 1.0
CE2 A:TYR112 4.3 34.5 1.0
C B:PRO81 4.4 17.1 1.0
CB B:PRO81 4.4 22.2 1.0
CA B:PRO81 4.5 16.9 1.0
OH A:TYR112 4.6 44.0 1.0
C B:ILE80 4.7 17.7 1.0
O A:HOH957 4.7 31.6 1.0
CG B:ASN413 4.9 46.9 1.0
CG B:ARG430 5.0 34.7 1.0

Chlorine binding site 3 out of 4 in 7pzz

Go back to Chlorine Binding Sites List in 7pzz
Chlorine binding site 3 out of 4 in the Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl613

b:22.1
occ:1.00
 OG C:SER82 3.1 17.9 1.0
ND2 C:ASN413 3.3 29.9 1.0
CG C:PRO81 3.5 21.1 1.0
N C:SER82 3.5 15.4 1.0
CB C:SER82 3.6 15.0 1.0
CD C:PRO81 3.6 17.6 1.0
NH1 C:ARG430 3.6 32.0 1.0
O C:HOH994 3.7 32.5 1.0
CD C:ARG430 3.7 30.4 1.0
CE1 C:HIS260 3.7 17.2 1.0
CG2 C:ILE80 3.9 15.9 1.0
N C:PRO81 4.0 14.4 1.0
NE2 C:HIS260 4.0 16.8 1.0
CA C:SER82 4.2 14.9 1.0
CZ C:ARG430 4.2 34.6 1.0
NE C:ARG430 4.3 29.4 1.0
O D:HOH853 4.3 38.8 1.0
C C:PRO81 4.3 14.7 1.0
CG C:ASN413 4.3 34.1 1.0
CB C:PRO81 4.4 16.4 1.0
CA C:PRO81 4.4 14.7 1.0
CB C:ASN413 4.5 26.4 1.0
C C:ILE80 4.7 13.5 1.0
O C:HOH1150 4.8 27.9 1.0
CG C:ARG430 4.8 29.4 1.0
O D:HOH779 4.9 34.9 1.0

Chlorine binding site 4 out of 4 in 7pzz

Go back to Chlorine Binding Sites List in 7pzz
Chlorine binding site 4 out of 4 in the Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Serine Hydroxymethyltransferase, Isoform 2 From Arabidopsis Thaliana (SHM2) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl609

b:29.4
occ:1.00
 OG D:SER82 3.3 21.5 1.0
NE D:ARG430 3.3 31.7 1.0
OH C:TYR112 3.4 30.0 1.0
NH2 D:ARG430 3.5 36.8 1.0
N D:SER82 3.5 17.8 1.0
CB D:SER82 3.6 18.4 1.0
CD D:PRO81 3.6 19.1 1.0
CG D:PRO81 3.6 25.9 1.0
CE1 D:HIS260 3.7 20.6 1.0
CZ D:ARG430 3.8 30.7 1.0
CG2 D:ILE80 3.9 21.8 1.0
NE2 D:HIS260 3.9 20.4 1.0
N D:PRO81 3.9 22.2 1.0
O D:HOH1045 4.1 33.1 1.0
ND2 D:ASN413 4.1 37.1 1.0
CA D:SER82 4.2 17.4 1.0
C D:PRO81 4.3 20.3 1.0
CZ C:TYR112 4.3 29.9 1.0
CD D:ARG430 4.3 27.6 1.0
CB D:PRO81 4.4 23.2 1.0
CA D:PRO81 4.4 18.9 1.0
CE2 C:TYR112 4.6 24.9 1.0
C D:ILE80 4.6 18.3 1.0
O D:HOH1128 5.0 37.0 1.0
ND1 D:HIS260 5.0 19.4 1.0

Reference:

I.Nogues, B.Sekula, S.Angelaccio, M.Grzechowiak, A.Tramonti, R.Contestabile, M.Ruszkowski. Arabidopsis Thaliana Serine Hydroxymethyltransferases: Functions, Structures, and Perspectives. Plant Physiol Biochem. V. 187 37 2022.
ISSN: ESSN 1873-2690
PubMed: 35947902
DOI: 10.1016/J.PLAPHY.2022.07.025
Page generated: Tue Jul 30 02:55:00 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy