Chlorine in PDB 7qf0: Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325

The structure of Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325, PDB code: 7qf0 was solved by I.Fernandez, R.Pederzoli, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.80 / 2.30
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	84.565, 148.875, 145.093, 90, 90, 90
R / Rfree (%)	18.5 / 22.1

The structure of Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325 also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325 (pdb code 7qf0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325, PDB code: 7qf0:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325 within 5.0Å range: probe atom residue distance (Å) B Occ H:Cl301 b:89.4 occ:1.00 NH1 H:ARG71 2.8 44.5 1.0 O H:VAL29 2.9 49.3 1.0 O H:ASN32 3.0 43.2 1.0 CG2 H:ILE51 3.5 34.9 1.0 CG H:MET34 3.6 47.9 1.0 CD H:ARG71 3.7 45.6 1.0 O H:ILE51 3.7 42.3 1.0 C H:VAL29 3.8 47.5 1.0 CZ H:ARG71 3.9 46.7 1.0 CG1 H:VAL29 3.9 49.4 1.0 CB H:MET34 4.0 44.4 1.0 O H:TYR52 4.1 44.2 1.0 C H:ASN32 4.2 42.5 1.0 CG1 H:ILE51 4.2 43.2 1.0 NE H:ARG71 4.2 48.6 1.0 CA H:SER30 4.2 50.1 1.0 C H:ILE51 4.4 40.9 1.0 N H:MET34 4.4 41.0 1.0 C H:TYR52 4.4 43.5 1.0 CD1 H:ILE51 4.4 45.3 1.0 CB H:ILE51 4.4 41.4 1.0 N H:SER30 4.4 48.7 1.0 C H:SER30 4.6 51.0 1.0 CA H:SER53 4.6 46.8 1.0 N H:SER53 4.6 43.5 1.0 CG H:ARG71 4.7 45.5 1.0 N H:ASN32 4.7 45.5 1.0 CA H:VAL29 4.8 47.0 1.0 O H:SER30 4.8 51.8 1.0 CA H:MET34 4.8 41.3 1.0 C H:TYR33 4.9 41.4 1.0 CB H:ARG71 4.9 44.8 1.0 CB H:VAL29 5.0 50.6 1.0 NH2 H:ARG71 5.0 47.7 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325 within 5.0Å range: probe atom residue distance (Å) B Occ L:Cl301 b:79.2 occ:1.00 N L:MET4 3.1 50.3 1.0 O L:MET4 3.4 54.9 1.0 CG2 L:THR98 3.5 41.8 1.0 CA L:GLN3 3.6 53.9 1.0 CB L:GLN3 3.8 61.0 1.0 C L:GLN3 3.9 50.0 1.0 C L:MET4 4.0 51.0 1.0 CA L:MET4 4.0 50.6 1.0 CG L:GLN3 4.1 71.6 1.0 O L:PHE99 4.4 43.4 1.0 CB L:MET4 4.5 50.5 1.0 N L:GLN3 5.0 51.1 1.0 CG L:MET4 5.0 50.5 1.0 CB L:THR98 5.0 43.9 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Sars-Cov-2 Rbd in Complex with the Human Antibody CV2.2325 within 5.0Å range: probe atom residue distance (Å) B Occ L:Cl302 b:86.0 occ:1.00 N L:GLU144 3.3 54.3 1.0 CG L:ARG143 3.4 58.9 1.0 CB L:GLU144 3.5 65.5 1.0 CB L:PRO142 3.6 41.4 1.0 N L:ARG143 3.7 44.5 1.0 O L:HOH452 3.8 51.9 1.0 CA L:GLU144 4.0 58.9 1.0 CG L:PRO142 4.2 43.9 1.0 C L:ARG143 4.2 48.6 1.0 CA L:ARG143 4.3 48.7 1.0 C L:PRO142 4.3 42.0 1.0 OE1 L:GLU144 4.3 97.2 1.0 CD L:ARG143 4.4 63.9 1.0 CB L:ARG143 4.4 51.5 1.0 CA L:PRO142 4.6 40.9 1.0 CG L:GLU144 4.8 76.7 1.0

I.Fernandez, F.A.Rey. Potent Antibodies Against Sars-Cov-2 Isolated From A Patient To Be Published.