Chlorine in PDB 7qib: Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp

Enzymatic activity of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp

All present enzymatic activity of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp:
2.4.1.266;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp, PDB code: 7qib was solved by A.Silva, D.Nunes-Costa, P.J.Barbosa Pereira, S.Macedo-Ribeiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.80 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.045, 89.957, 95.217, 90, 90, 90
R / Rfree (%) 17.4 / 19.6

Other elements in 7qib:

The structure of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp (pdb code 7qib). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp, PDB code: 7qib:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7qib

Go back to Chlorine Binding Sites List in 7qib
Chlorine binding site 1 out of 2 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:32.2
occ:0.81
 O A:HOH670 2.8 35.3 1.0
OG1 A:THR181 3.0 25.9 1.0
O A:HOH734 3.1 47.3 1.0
N A:THR181 3.3 21.0 1.0
CA A:GLY178 3.6 40.3 1.0
CB A:THR181 3.7 24.7 1.0
C A:GLY178 3.7 33.3 1.0
N A:VAL180 3.8 26.1 1.0
CB A:VAL180 3.9 24.7 1.0
N A:GLY178 4.0 45.7 1.0
O A:GLY178 4.0 28.7 1.0
CA A:THR181 4.0 21.4 1.0
C A:VAL180 4.1 23.9 1.0
CA A:VAL180 4.1 24.7 1.0
N A:ARG179 4.2 31.1 1.0
CD1 A:LEU203 4.4 23.0 1.0
C A:ARG179 4.7 27.3 1.0
CG2 A:VAL180 4.7 28.0 1.0
O A:HOH709 4.8 31.7 1.0
CG1 A:VAL180 4.9 25.5 1.0
O A:HOH572 5.0 22.3 1.0

Chlorine binding site 2 out of 2 in 7qib

Go back to Chlorine Binding Sites List in 7qib
Chlorine binding site 2 out of 2 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 in Complex with Udp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:38.2
occ:0.72
 O B:HOH662 2.6 41.7 1.0
O B:HOH691 2.7 49.4 1.0
OG1 B:THR181 3.0 28.8 1.0
N B:THR181 3.3 25.9 1.0
CA B:GLY178 3.5 45.7 1.0
C B:GLY178 3.6 39.8 1.0
CB B:THR181 3.7 28.0 1.0
N B:VAL180 3.8 29.0 1.0
CB B:VAL180 3.9 29.2 1.0
O B:GLY178 3.9 31.9 1.0
N B:GLY178 4.0 55.2 1.0
CA B:THR181 4.1 25.8 1.0
C B:VAL180 4.1 28.7 1.0
CA B:VAL180 4.1 25.8 1.0
N B:ARG179 4.1 35.7 1.0
O B:HOH638 4.3 44.1 1.0
CD1 B:LEU203 4.6 23.2 1.0
C B:ARG179 4.7 31.2 1.0
CG2 B:VAL180 4.7 30.3 1.0
CG1 B:VAL180 4.9 26.3 1.0
O B:HOH687 4.9 32.9 1.0
O B:HOH561 5.0 22.7 1.0

Reference:

A.Silva, D.Nunes-Costa, P.J.Barbosa Pereira, S.Macedo-Ribeiro. Crystal Structure of Mycobacterium Hassiacum Glucosyl-3-Phosphoglycerate Synthase at pH 8.5 in Complex with Udp To Be Published.
Page generated: Tue Jul 30 03:15:08 2024

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