Chlorine in PDB 7qqy: Yeast GID10 Bound to ART2 Pro/N-Degron

Protein crystallography data

The structure of Yeast GID10 Bound to ART2 Pro/N-Degron, PDB code: 7qqy was solved by J.Chrustowicz, D.Sherpa, B.A.Schulman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.74 / 1.26
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.524, 67.817, 75.489, 90, 90, 90
R / Rfree (%) 19.2 / 22.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Yeast GID10 Bound to ART2 Pro/N-Degron (pdb code 7qqy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Yeast GID10 Bound to ART2 Pro/N-Degron, PDB code: 7qqy:

Chlorine binding site 1 out of 1 in 7qqy

Go back to Chlorine Binding Sites List in 7qqy
Chlorine binding site 1 out of 1 in the Yeast GID10 Bound to ART2 Pro/N-Degron


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Yeast GID10 Bound to ART2 Pro/N-Degron within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:27.5
occ:1.00
OG A:SER113 3.0 28.2 1.0
O A:HOH593 3.1 48.3 1.0
O A:HOH582 3.2 37.7 1.0
N A:LEU109 3.2 20.3 1.0
N A:TYR110 3.4 20.5 1.0
CB A:SER113 3.6 28.9 1.0
CD2 A:TYR110 3.9 27.3 1.0
CA A:PRO108 3.9 18.1 1.0
CA A:LEU109 4.0 21.8 1.0
C A:PRO108 4.0 19.3 1.0
CB A:PRO108 4.0 19.3 1.0
CB A:LEU109 4.1 24.2 1.0
CB A:TYR110 4.1 21.3 1.0
C A:LEU109 4.2 19.7 1.0
CA A:TYR110 4.3 21.3 1.0
CA A:SER113 4.4 23.8 1.0
CG A:TYR110 4.4 24.0 1.0
O A:TYR110 4.5 19.9 1.0
CB A:SER115 4.6 27.2 1.0
CE2 A:TYR110 4.8 30.9 1.0
C A:TYR110 4.9 19.7 1.0
O A:HOH504 4.9 35.6 1.0

Reference:

C.R.Langlois, V.Beier, O.Karayel, J.Chrustowicz, D.Sherpa, M.Mann, B.A.Schulman. A Gid E3 Ligase Assembly Ubiquitinates An RSP5 E3 Adaptor and Regulates Plasma Membrane Transporters. Embo Rep. V. 23 53835 2022.
ISSN: ESSN 1469-3178
PubMed: 35437932
DOI: 10.15252/EMBR.202153835
Page generated: Tue Apr 4 21:28:12 2023

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