Chlorine in PDB 7qz1: Formate Dehydrogenase From Starkeya Novella

Enzymatic activity of Formate Dehydrogenase From Starkeya Novella

All present enzymatic activity of Formate Dehydrogenase From Starkeya Novella:
1.17.1.9;

Protein crystallography data

The structure of Formate Dehydrogenase From Starkeya Novella, PDB code: 7qz1 was solved by N.Pontillo, D.J.Slotboom, A.Guskov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.87 / 2.10
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 59.255, 59.481, 122.673, 79.89, 85.41, 63.15
R / Rfree (%) 17.6 / 22.4

Other elements in 7qz1:

The structure of Formate Dehydrogenase From Starkeya Novella also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Formate Dehydrogenase From Starkeya Novella (pdb code 7qz1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Formate Dehydrogenase From Starkeya Novella, PDB code: 7qz1:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7qz1

Go back to Chlorine Binding Sites List in 7qz1
Chlorine binding site 1 out of 2 in the Formate Dehydrogenase From Starkeya Novella


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Formate Dehydrogenase From Starkeya Novella within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl502

b:57.6
occ:1.00
N B:ARG226 3.5 48.5 1.0
CA B:HIS225 3.9 49.0 1.0
ND1 B:HIS225 4.1 52.6 1.0
C B:HIS225 4.2 49.1 1.0
CB B:HIS225 4.3 48.7 1.0
CB B:ARG226 4.4 49.6 1.0
CA B:ARG226 4.5 49.0 1.0
CG B:HIS225 4.6 52.7 1.0
O B:ARG224 4.7 54.2 1.0
O B:ARG226 4.8 51.0 1.0

Chlorine binding site 2 out of 2 in 7qz1

Go back to Chlorine Binding Sites List in 7qz1
Chlorine binding site 2 out of 2 in the Formate Dehydrogenase From Starkeya Novella


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Formate Dehydrogenase From Starkeya Novella within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl503

b:63.4
occ:1.00
N B:ASP11 3.7 38.1 1.0
CE2 B:TRP101 3.8 45.0 1.0
CZ2 B:TRP101 4.0 48.7 1.0
CD2 B:TRP101 4.0 44.0 1.0
OD2 B:ASP11 4.0 48.7 1.0
CB B:ASP11 4.1 39.3 1.0
CB B:TYR10 4.2 39.1 1.0
CG B:ASP11 4.2 47.5 1.0
CH2 B:TRP101 4.2 49.8 1.0
NE1 B:TRP101 4.2 42.9 1.0
CE3 B:TRP101 4.3 44.1 1.0
CA B:TYR10 4.3 38.4 1.0
CZ3 B:TRP101 4.4 47.6 1.0
CG B:TRP101 4.5 42.7 1.0
C B:TYR10 4.5 39.6 1.0
CA B:ASP11 4.5 39.3 1.0
CD1 B:TRP101 4.6 41.6 1.0
O B:HOH607 4.7 34.8 1.0
OD1 B:ASP11 4.8 43.8 1.0

Reference:

N.Pontillo, D.J.Slotboom, A.Guskov. Biochemical and Structural Insight Into the Chemical Resistance of the Formate Dehydrogenase From Starkeya Novella To Be Published.
Page generated: Tue Apr 4 21:31:35 2023

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