Chlorine in PDB 7r8p: Open Form of SAOUHSC_02373 in Complex with Adp, MG2+ and Na+

Protein crystallography data

The structure of Open Form of SAOUHSC_02373 in Complex with Adp, MG2+ and Na+, PDB code: 7r8p was solved by J.L.Pederick, J.B.Bruning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.45 / 1.37
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.258, 70.581, 109.773, 90, 90, 90
R / Rfree (%) 19 / 21.5

Other elements in 7r8p:

The structure of Open Form of SAOUHSC_02373 in Complex with Adp, MG2+ and Na+ also contains other interesting chemical elements:

Sodium (Na) 1 atom
Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Open Form of SAOUHSC_02373 in Complex with Adp, MG2+ and Na+ (pdb code 7r8p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Open Form of SAOUHSC_02373 in Complex with Adp, MG2+ and Na+, PDB code: 7r8p:

Chlorine binding site 1 out of 1 in 7r8p

Go back to Chlorine Binding Sites List in 7r8p
Chlorine binding site 1 out of 1 in the Open Form of SAOUHSC_02373 in Complex with Adp, MG2+ and Na+


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Open Form of SAOUHSC_02373 in Complex with Adp, MG2+ and Na+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:26.9
occ:0.81
O A:HOH697 3.0 25.6 1.0
NH1 A:ARG138 3.2 27.2 1.0
ND2 A:ASN135 3.3 26.1 1.0
CA A:ALA132 3.7 17.4 1.0
CD A:ARG138 3.8 27.3 1.0
CG1 A:VAL131 3.9 21.9 1.0
O A:HOH803 3.9 39.5 1.0
N A:ALA132 4.0 18.7 1.0
CB A:ALA132 4.1 19.7 1.0
CB A:ASN135 4.2 19.7 1.0
O A:VAL131 4.2 20.6 1.0
C A:VAL131 4.2 19.1 1.0
CG A:ASN135 4.3 25.6 1.0
CZ A:ARG138 4.3 28.5 1.0
NE A:ARG138 4.5 26.9 1.0
O A:HOH862 4.7 43.8 1.0
CB A:VAL131 4.7 21.1 1.0
C A:ALA132 4.9 19.7 1.0

Reference:

J.L.Pederick, A.J.Horsfall, B.Jovcevski, J.Klose, A.D.Abell, T.L.Pukala, J.B.Bruning. Discovery of An ʟ-Amino Acid Ligase Implicated in Staphylococcal Sulfur Amino Acid Metabolism. J.Biol.Chem. V. 298 02392 2022.
ISSN: ESSN 1083-351X
PubMed: 35988643
DOI: 10.1016/J.JBC.2022.102392
Page generated: Tue Jul 30 03:31:57 2024

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