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Chlorine in PDB 7rcv: High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

Enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803

All present enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803:
1.10.3.9;

Other elements in 7rcv:

The structure of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:

Magnesium (Mg) 70 atoms
Iron (Fe) 6 atoms
Calcium (Ca) 8 atoms
Manganese (Mn) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 (pdb code 7rcv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803, PDB code: 7rcv:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7rcv

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Chlorine binding site 1 out of 4 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:10.0
occ:1.00
O A:HOH561 2.8 9.1 1.0
O D:HOH573 3.1 7.8 1.0
NZ D:LYS317 3.1 3.5 1.0
ND2 A:ASN181 3.3 2.8 1.0
N A:GLU333 3.4 6.4 1.0
CE D:LYS317 3.5 3.5 1.0
CA A:HIS332 3.8 4.6 1.0
CB A:HIS332 3.8 4.6 1.0
CG A:GLU333 4.0 6.4 1.0
C A:HIS332 4.0 4.6 1.0
OD1 A:ASN181 4.1 2.8 1.0
CG A:ASN181 4.1 2.8 1.0
CD2 D:LEU321 4.1 2.7 1.0
CB D:LYS317 4.2 3.5 1.0
O A:HOH593 4.2 8.6 1.0
CG2 A:VAL185 4.2 2.1 1.0
CA A:GLU333 4.3 6.4 1.0
CD1 D:LEU321 4.3 2.7 1.0
O A:HOH503 4.4 13.3 1.0
CG D:LEU321 4.5 2.7 1.0
CD D:LYS317 4.7 3.5 1.0
CG D:LYS317 4.7 3.5 1.0
O A:HOH568 4.7 11.0 1.0
CB A:GLU333 4.8 6.4 1.0
CG A:HIS332 4.8 4.6 1.0
O D:LYS317 4.8 3.5 1.0
OE2 A:GLU333 4.9 6.4 1.0
CD A:GLU333 5.0 6.4 1.0
CD2 A:HIS332 5.0 4.6 1.0

Chlorine binding site 2 out of 4 in 7rcv

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Chlorine binding site 2 out of 4 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:10.3
occ:1.00
O C:HOH696 2.8 7.7 1.0
N A:ASN338 3.0 8.0 1.0
N C:GLU341 3.3 5.8 1.0
O A:HOH562 3.4 9.1 1.0
CD2 A:PHE339 3.6 7.3 1.0
N A:PHE339 3.6 7.3 1.0
CA A:HIS337 3.7 6.2 1.0
C A:HIS337 3.8 6.2 1.0
CA A:ASN338 3.9 8.0 1.0
CA C:GLY340 3.9 6.6 1.0
CB C:GLU341 4.0 5.8 1.0
CB A:ASN338 4.0 8.0 1.0
C C:GLY340 4.1 6.6 1.0
O A:ALA336 4.2 5.9 1.0
C A:ASN338 4.2 8.0 1.0
CA C:GLU341 4.2 5.8 1.0
CB A:HIS337 4.3 6.2 1.0
CG C:GLU341 4.3 5.8 1.0
CG A:PHE339 4.3 7.3 1.0
CB A:PHE339 4.3 7.3 1.0
CE2 A:PHE339 4.3 7.3 1.0
O C:HOH659 4.5 9.9 1.0
CA A:PHE339 4.5 7.3 1.0
O C:HOH629 4.5 10.1 1.0
O A:PHE339 4.7 7.3 1.0
O C:HOH645 4.7 9.3 1.0
N A:HIS337 4.8 6.2 1.0
CG A:ASN338 4.8 8.0 1.0
CD2 A:HIS337 4.8 6.2 1.0
N C:THR342 4.9 4.6 1.0
C A:ALA336 4.9 5.9 1.0
CG A:HIS337 4.9 6.2 1.0

Chlorine binding site 3 out of 4 in 7rcv

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Chlorine binding site 3 out of 4 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl403

b:10.0
occ:1.00
O a:HOH561 2.8 9.1 1.0
O d:HOH573 3.1 7.8 1.0
NZ d:LYS317 3.1 3.5 1.0
ND2 a:ASN181 3.3 2.8 1.0
N a:GLU333 3.4 6.4 1.0
CE d:LYS317 3.5 3.5 1.0
CA a:HIS332 3.8 4.6 1.0
CB a:HIS332 3.8 4.6 1.0
CG a:GLU333 4.0 6.4 1.0
C a:HIS332 4.0 4.6 1.0
OD1 a:ASN181 4.1 2.8 1.0
CG a:ASN181 4.1 2.8 1.0
CD2 d:LEU321 4.1 2.7 1.0
CB d:LYS317 4.2 3.5 1.0
O a:HOH593 4.2 8.6 1.0
CG2 a:VAL185 4.3 2.1 1.0
CA a:GLU333 4.3 6.4 1.0
CD1 d:LEU321 4.3 2.7 1.0
O a:HOH503 4.4 13.3 1.0
CG d:LEU321 4.5 2.7 1.0
CD d:LYS317 4.7 3.5 1.0
CG d:LYS317 4.7 3.5 1.0
O a:HOH568 4.7 11.0 1.0
CB a:GLU333 4.8 6.4 1.0
CG a:HIS332 4.8 4.6 1.0
O d:LYS317 4.8 3.5 1.0
OE2 a:GLU333 4.9 6.4 1.0
CD a:GLU333 5.0 6.4 1.0
CD2 a:HIS332 5.0 4.6 1.0

Chlorine binding site 4 out of 4 in 7rcv

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Chlorine binding site 4 out of 4 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl404

b:10.3
occ:1.00
O c:HOH696 2.8 7.7 1.0
N a:ASN338 3.0 8.0 1.0
N c:GLU341 3.3 5.8 1.0
O a:HOH562 3.4 9.1 1.0
CD2 a:PHE339 3.6 7.3 1.0
N a:PHE339 3.6 7.3 1.0
CA a:HIS337 3.7 6.2 1.0
C a:HIS337 3.8 6.2 1.0
CA a:ASN338 3.9 8.0 1.0
CA c:GLY340 3.9 6.6 1.0
CB c:GLU341 4.0 5.8 1.0
CB a:ASN338 4.0 8.0 1.0
C c:GLY340 4.1 6.6 1.0
O a:ALA336 4.2 5.9 1.0
C a:ASN338 4.2 8.0 1.0
CA c:GLU341 4.2 5.8 1.0
CB a:HIS337 4.3 6.2 1.0
CG c:GLU341 4.3 5.8 1.0
CG a:PHE339 4.3 7.3 1.0
CB a:PHE339 4.3 7.3 1.0
CE2 a:PHE339 4.3 7.3 1.0
O c:HOH659 4.5 9.9 1.0
CA a:PHE339 4.5 7.3 1.0
O c:HOH629 4.5 10.1 1.0
O a:PHE339 4.7 7.3 1.0
O c:HOH645 4.7 9.3 1.0
N a:HIS337 4.8 6.2 1.0
CG a:ASN338 4.8 8.0 1.0
CD2 a:HIS337 4.8 6.2 1.0
N c:THR342 4.9 4.6 1.0
C a:ALA336 4.9 5.9 1.0
CG a:HIS337 4.9 6.2 1.0

Reference:

C.J.Gisriel, J.Wang, J.Liu, D.A.Flesher, K.M.Reiss, H.Huang, K.R.Yang, W.H.Armstrong, M.R.Gunner, V.S.Batista, R.J.Debus, G.W.Brudvig. High-Resolution Cryo-Em Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 To Be Published.
Page generated: Thu Mar 31 02:38:20 2022

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