Chlorine in PDB 7rom: Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad

Enzymatic activity of Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad

All present enzymatic activity of Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad:
1.6.2.2;

Protein crystallography data

The structure of Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad, PDB code: 7rom was solved by M.K.Fenwick, Y.Zhang, H.Lin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.65 / 1.65
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.225, 72.225, 114.669, 90, 90, 90
R / Rfree (%) 15.5 / 18.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad (pdb code 7rom). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad, PDB code: 7rom:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7rom

Go back to Chlorine Binding Sites List in 7rom
Chlorine binding site 1 out of 3 in the Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:31.7
occ:1.00
 NE2 A:HIS76 3.0 18.9 1.0
O A:HOH626 3.0 27.8 1.0
CG1 A:VAL78 3.6 17.3 0.5
CB A:ARG136 3.7 14.7 1.0
CG2 A:VAL78 3.8 15.7 0.5
CE1 A:HIS76 3.9 17.9 1.0
OG A:SER91 3.9 18.6 1.0
CG A:ARG136 4.0 15.6 1.0
CD2 A:HIS76 4.0 16.4 1.0
O A:HOH544 4.1 26.1 1.0
CD A:ARG136 4.5 19.1 1.0
CB A:VAL78 5.0 17.5 0.5

Chlorine binding site 2 out of 3 in 7rom

Go back to Chlorine Binding Sites List in 7rom
Chlorine binding site 2 out of 3 in the Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:38.7
occ:1.00
 O A:HOH449 3.1 45.5 1.0
NE A:ARG269 3.1 52.6 1.0
N A:GLN280 3.2 19.3 1.0
O A:HOH661 3.2 28.7 1.0
O A:HOH535 3.2 49.1 1.0
CA A:ASP279 3.6 21.2 1.0
CD A:ARG269 3.7 47.8 1.0
CB A:ARG269 3.7 34.8 1.0
C A:ASP279 3.9 21.7 1.0
CB A:GLN280 4.0 22.3 1.0
CZ A:ARG269 4.2 55.0 1.0
CA A:GLN280 4.2 18.1 1.0
CB A:ASP279 4.2 22.1 1.0
CG A:ARG269 4.3 37.9 1.0
NH2 A:ARG269 4.3 52.1 1.0
O A:HOH426 4.4 52.5 1.0
OD1 A:ASP279 4.4 27.0 1.0
O A:GLU278 4.5 25.5 1.0
CG A:ASP279 4.7 26.5 1.0
N A:ASP279 4.8 21.9 1.0
O A:ARG270 4.9 43.1 1.0

Chlorine binding site 3 out of 3 in 7rom

Go back to Chlorine Binding Sites List in 7rom
Chlorine binding site 3 out of 3 in the Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:31.8
occ:1.00
 ND2 A:ASN38 3.3 58.3 1.0
NZ A:LYS133 3.3 27.6 1.0
NH2 A:ARG136 3.4 21.1 1.0
OD1 A:ASN38 3.7 54.3 1.0
CG A:ASN38 3.8 40.4 1.0
CD A:LYS133 4.1 25.9 1.0
CE A:LYS133 4.2 23.5 1.0
O A:ASN38 4.4 48.2 1.0
O A:HOH669 4.5 28.4 1.0
O A:HOH698 4.5 27.5 1.0
CZ A:ARG136 4.6 19.7 1.0
NE A:ARG136 4.9 20.1 1.0

Reference:

M.K.Fenwick, H.Lin. Crystal Structure of Saccharomyces Cerevisiae Nadh-Cytochrome B5 Reductase 1 (CBR1) Fragment (Residues 28-284) Bound to Fad To Be Published.
Page generated: Tue Apr 4 21:36:54 2023

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