Chlorine in PDB 7rth: Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"

Protein crystallography data

The structure of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab", PDB code: 7rth was solved by E.V.Filippova, S.Mukherjee, J.S.Bloch, K.P.Locher, A.A.Kossiakoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 90.91 / 3.19
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 225.53, 130.28, 223.98, 90, 107.99, 90
R / Rfree (%) 21.6 / 26.7

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 29;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" (pdb code 7rth). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 29 binding sites of Chlorine where determined in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab", PDB code: 7rth:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 29 in 7rth

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Chlorine binding site 1 out of 29 in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:53.2
occ:1.00
 NE2 a:GLN100g 3.4 114.1 1.0
N B:ASN28 3.4 69.5 1.0
CB B:ASN28 3.6 85.2 1.0
OE1 a:GLN100g 3.8 110.1 1.0
CD a:GLN100g 4.0 109.6 1.0
CA B:ASN28 4.1 76.1 1.0
CE1 B:TYR32 4.2 73.3 1.0
CA B:PHE27 4.3 61.6 1.0
CB B:PHE27 4.4 59.9 1.0
C B:PHE27 4.4 63.9 1.0
OH B:TYR32 4.4 83.1 1.0
CZ B:TYR32 4.8 75.4 1.0
CG B:ASN28 4.9 96.2 1.0
O B:ASN28 5.0 79.5 1.0
CB a:GLU44 5.0 77.7 1.0

Chlorine binding site 2 out of 29 in 7rth

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Chlorine binding site 2 out of 29 in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"


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Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:55.3
occ:1.00
 N B:GLY100i 3.4 68.0 1.0
NE1 B:TRP100g 3.5 64.3 1.0
CB B:TRP99 3.7 58.9 1.0
CD1 B:TRP100g 3.8 68.0 1.0
CA B:TRP99 3.9 62.3 1.0
CA B:GLY100i 4.1 67.8 1.0
O B:TRP99 4.2 77.4 1.0
C B:ASN100h 4.3 73.4 1.0
CA B:ASN100h 4.3 74.8 1.0
N B:GLY100j 4.3 63.6 1.0
OD1 B:ASN100h 4.3 75.3 1.0
CB B:HIS100b 4.3 67.9 1.0
CB B:TYR96 4.5 67.4 1.0
C B:TRP99 4.6 72.5 1.0
CE2 B:TRP100g 4.7 66.2 1.0
CD1 B:TYR96 4.7 71.2 1.0
C B:GLY100i 4.7 62.7 1.0
CG B:TYR96 4.7 68.2 1.0
N B:ALA100c 5.0 69.2 1.0
C B:HIS100b 5.0 71.6 1.0

Chlorine binding site 3 out of 29 in 7rth

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Chlorine binding site 3 out of 29 in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl306

b:42.7
occ:1.00
 N C:GLY101 3.5 46.4 1.0
O C:TYR86 3.5 39.5 1.0
SG C:CYS88 3.6 75.0 1.0
CA C:GLY101 3.7 45.7 1.0
N C:CYS88 3.8 43.2 1.0
OG1 C:THR102 3.9 26.6 1.0
C C:GLY101 4.1 42.6 1.0
N C:THR102 4.2 38.5 1.0
CA C:TYR87 4.2 40.3 1.0
CZ3 C:TRP35 4.2 37.9 1.0
CB C:CYS88 4.3 55.8 1.0
C C:TYR87 4.3 42.6 1.0
C C:TYR86 4.5 36.4 1.0
N C:GLN100 4.5 60.7 1.0
CA C:CYS88 4.7 44.8 1.0
CG2 C:ILE21 4.7 30.1 1.0
C C:GLN100 4.7 55.7 1.0
CA C:GLY99 4.7 52.4 1.0
N C:TYR87 4.8 37.8 1.0
C C:GLY99 4.8 55.3 1.0
CB C:THR102 4.8 28.1 1.0
O C:THR22 4.8 57.3 1.0
CH2 C:TRP35 4.8 37.1 1.0
O C:GLY101 4.8 38.2 1.0

Chlorine binding site 4 out of 29 in 7rth

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Chlorine binding site 4 out of 29 in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl307

b:47.5
occ:1.00
 CG2 C:VAL110 3.5 48.6 1.0
CD E:PRO204 3.5 48.2 1.0
NE2 C:GLN199 3.7 54.6 1.0
CG E:PRO204 3.8 48.2 1.0
CG C:GLN199 4.1 45.6 1.0
O E:SER202 4.2 54.7 1.0
N E:PRO204 4.2 46.9 1.0
CD C:GLN199 4.3 48.3 1.0
CA E:SER203 4.4 47.4 1.0
CG2 E:THR197 4.5 41.4 1.0
C E:SER203 4.6 42.4 1.0
C E:SER202 4.8 48.7 1.0
CB C:VAL110 4.8 50.7 1.0
O E:LEU201 4.9 48.2 1.0
N E:SER203 4.9 49.8 1.0

Chlorine binding site 5 out of 29 in 7rth

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Chlorine binding site 5 out of 29 in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl303

b:27.3
occ:1.00
 N D:ASN28 3.4 96.7 1.0
NE2 c:GLN100g 3.5 95.0 1.0
CB D:ASN28 3.7 118.4 1.0
O c:HOH304 3.8 45.9 1.0
OE1 c:GLN100g 4.1 101.0 1.0
CA D:ASN28 4.2 102.8 1.0
CD c:GLN100g 4.2 93.3 1.0
CA D:PHE27 4.2 80.6 1.0
CB D:PHE27 4.3 77.6 1.0
C D:PHE27 4.3 85.7 1.0
CB c:GLU44 4.5 96.5 1.0
CE2 D:TYR32 4.5 62.6 1.0
OH D:TYR32 4.6 70.3 1.0
CZ D:TYR32 5.0 63.6 1.0

Chlorine binding site 6 out of 29 in 7rth

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Chlorine binding site 6 out of 29 in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl304

b:42.4
occ:1.00
 N D:GLY100i 3.1 44.1 1.0
CB D:TRP99 3.4 46.7 1.0
CA D:TRP99 3.6 52.5 1.0
NE1 D:TRP100g 3.6 32.5 1.0
CA D:GLY100i 3.8 37.7 1.0
CD1 D:TRP100g 3.8 38.7 1.0
O D:TRP99 3.9 70.0 1.0
C D:ASN100h 4.1 37.9 1.0
OD1 D:ASN100h 4.1 37.4 1.0
CA D:ASN100h 4.2 37.8 1.0
C D:TRP99 4.2 61.7 1.0
N D:GLY100j 4.3 30.3 1.0
CB D:HIS100b 4.4 45.2 1.0
CB D:TYR96 4.4 44.7 1.0
C D:GLY100i 4.5 29.9 1.0
CG D:TYR96 4.7 42.4 1.0
CG D:TRP99 4.8 47.2 1.0
N D:ALA100c 4.8 51.4 1.0
N D:TRP99 4.8 45.3 1.0
CD1 D:TYR96 4.8 46.3 1.0
CE2 D:TRP100g 4.9 30.7 1.0
C D:HIS100b 4.9 54.5 1.0
N D:ASN100h 5.0 40.7 1.0

Chlorine binding site 7 out of 29 in 7rth

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Chlorine binding site 7 out of 29 in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl305

b:31.5
occ:1.00
 CG2 F:VAL169 3.6 45.0 1.0
CB E:GLN160 3.7 45.2 1.0
CG E:GLN160 3.9 62.7 1.0
CB E:THR178 4.2 39.5 1.0
OE1 F:GLN171 4.2 65.6 1.0
CG2 E:THR178 4.3 36.7 1.0
CG F:GLN171 4.4 51.4 1.0
OG1 E:THR180 4.5 54.3 1.0
OG F:SER177 4.7 51.8 1.0
CB F:SER177 4.7 51.0 1.0
OG1 E:THR178 4.8 41.8 1.0
O E:THR178 4.8 40.7 1.0
CD F:GLN171 4.8 60.1 1.0
CA E:GLN160 4.9 37.6 1.0
CB F:VAL169 5.0 44.4 1.0

Chlorine binding site 8 out of 29 in 7rth

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Chlorine binding site 8 out of 29 in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl306

b:41.8
occ:1.00
 N E:GLY101 3.2 56.9 1.0
O E:TYR86 3.5 41.5 1.0
SG E:CYS88 3.5 85.5 1.0
CA E:GLY101 3.6 53.6 1.0
N E:CYS88 3.6 47.9 1.0
CA E:TYR87 3.8 40.8 1.0
N E:GLN100 4.0 66.2 1.0
C E:TYR87 4.1 42.6 1.0
C E:GLY101 4.1 50.2 1.0
N E:THR102 4.2 52.6 1.0
CA E:GLY99 4.3 62.1 1.0
C E:GLY99 4.3 63.6 1.0
OG1 E:THR102 4.3 48.2 1.0
C E:GLN100 4.3 62.9 1.0
C E:TYR86 4.4 40.9 1.0
CB E:CYS88 4.4 67.4 1.0
N E:TYR87 4.5 40.5 1.0
CA E:CYS88 4.6 53.8 1.0
CZ3 E:TRP35 4.7 36.2 1.0
CA E:GLN100 4.7 69.7 1.0
CB E:TYR87 4.9 41.0 1.0
O E:GLY101 4.9 52.9 1.0

Chlorine binding site 9 out of 29 in 7rth

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Chlorine binding site 9 out of 29 in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl301

b:20.3
occ:1.00
 N F:GLY100i 3.4 47.9 1.0
CB F:TRP99 3.5 35.9 1.0
NE1 F:TRP100g 3.5 34.5 1.0
CA F:TRP99 3.6 45.9 1.0
CD1 F:TRP100g 3.8 33.0 1.0
O F:TRP99 3.9 70.2 1.0
CA F:GLY100i 4.1 51.9 1.0
CB F:HIS100b 4.1 43.1 1.0
CB F:TYR96 4.1 44.4 1.0
C F:TRP99 4.2 55.3 1.0
C F:ASN100h 4.4 43.1 1.0
CA F:ASN100h 4.4 40.1 1.0
CG F:TYR96 4.4 44.1 1.0
OD1 F:ASN100h 4.5 53.1 1.0
CD1 F:TYR96 4.6 40.7 1.0
N F:GLY100j 4.6 57.0 1.0
CE2 F:TRP100g 4.7 38.1 1.0
N F:ALA100c 4.7 46.2 1.0
ND1 F:HIS100b 4.8 43.3 1.0
N F:TRP99 4.8 51.8 1.0
C F:HIS100b 4.8 49.4 1.0
CG F:TRP99 4.8 35.1 1.0
C F:GLY100i 4.9 57.3 1.0
CG F:HIS100b 4.9 43.9 1.0

Chlorine binding site 10 out of 29 in 7rth

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Chlorine binding site 10 out of 29 in the Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab"


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of An Anti-Lysozyme Nanobody in Complex with An Anti-Nanobody Fab "Nabfab" within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl304

b:61.2
occ:1.00
 N G:ARG61 3.3 53.0 1.0
NH1 G:ARG61 3.4 58.8 1.0
CG G:ARG61 3.5 44.0 1.0
OG G:SER60 3.5 70.7 1.0
CB G:ARG61 3.5 43.8 1.0
N G:SER60 3.7 55.9 1.0
CB G:PRO59 3.9 48.4 1.0
CD G:ARG61 3.9 47.8 1.0
CA G:ARG61 4.0 49.2 1.0
C G:SER60 4.1 54.5 1.0
C G:PRO59 4.3 58.5 1.0
CA G:SER60 4.3 56.6 1.0
CZ G:ARG61 4.4 56.2 1.0
CA G:PRO59 4.5 50.1 1.0
CB G:SER60 4.5 63.7 1.0
NE G:ARG61 4.6 52.1 1.0

Reference:

E.V.Filippova, S.Mukherjee, J.S.Bloch, K.P.Locher, A.A.Kossiakoff. Crystal Structure of A Nanobody with An Anti-Nanobody Fab To Be Published.
Page generated: Fri Sep 24 13:00:19 2021

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