Chlorine in PDB 7s94: Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein

The structure of Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein, PDB code: 7s94 was solved by T.T.Dean, J.E.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.70 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	96.86, 34.219, 100.445, 90, 99.95, 90
R / Rfree (%)	17.5 / 21.7

The binding sites of Chlorine atom in the Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein (pdb code 7s94). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein, PDB code: 7s94:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl601 b:11.3 occ:1.00 HD22 A:ASN534 2.4 13.8 1.0 HD22 C:ASN534 2.4 13.1 1.0 HD22 B:ASN534 2.4 15.8 1.0 ND2 A:ASN534 3.2 11.4 1.0 HG22 B:VAL531 3.2 12.6 1.0 ND2 C:ASN534 3.2 10.8 1.0 ND2 B:ASN534 3.2 13.1 1.0 HG21 A:VAL531 3.2 14.2 1.0 HG13 C:VAL531 3.3 13.7 1.0 HG13 B:VAL531 3.3 15.2 1.0 HG22 C:VAL531 3.3 14.2 1.0 HA A:VAL531 3.3 14.6 1.0 HG11 A:VAL531 3.4 13.0 1.0 HA C:VAL531 3.4 15.0 1.0 HA B:VAL531 3.4 16.9 1.0 HB2 B:ASN534 3.4 12.6 1.0 HB2 C:ASN534 3.5 13.9 1.0 HB2 A:ASN534 3.5 10.1 1.0 HB3 B:ASN534 3.6 12.6 1.0 HD21 A:ASN534 3.7 13.8 1.0 HB3 C:ASN534 3.7 13.9 1.0 HB3 A:ASN534 3.7 10.1 1.0 HD21 C:ASN534 3.7 13.1 1.0 HD21 B:ASN534 3.7 15.8 1.0 CB B:ASN534 3.9 10.9 1.0 CB C:ASN534 3.9 11.5 1.0 CB A:ASN534 3.9 8.4 1.0 HG12 A:VAL531 4.0 13.0 1.0 CG1 A:VAL531 4.0 10.8 1.0 CG1 C:VAL531 4.1 11.3 1.0 CG C:ASN534 4.1 8.7 1.0 CG B:ASN534 4.1 14.7 1.0 CG A:ASN534 4.1 10.7 1.0 CG1 B:VAL531 4.1 12.6 1.0 CG2 B:VAL531 4.1 10.4 1.0 CG2 A:VAL531 4.1 11.8 1.0 CA A:VAL531 4.2 12.1 1.0 CG2 C:VAL531 4.2 11.8 1.0 CA C:VAL531 4.2 12.4 1.0 CA B:VAL531 4.3 14.0 1.0 HG11 C:VAL531 4.3 13.7 1.0 HG11 B:VAL531 4.3 15.2 1.0 CB A:VAL531 4.3 10.0 1.0 CB B:VAL531 4.4 12.0 1.0 CB C:VAL531 4.4 8.2 1.0 O C:VAL531 4.6 12.1 1.0 O B:VAL531 4.6 11.8 1.0 HG23 B:VAL531 4.6 12.6 1.0 HG23 A:VAL531 4.6 14.2 1.0 O A:VAL531 4.6 10.6 1.0 HG23 C:VAL531 4.7 14.2 1.0 HG21 B:VAL531 4.7 12.6 1.0 HG22 A:VAL531 4.8 14.2 1.0 HG21 C:VAL531 4.8 14.2 1.0 HG12 C:VAL531 4.8 13.7 1.0 HG12 B:VAL531 4.9 15.2 1.0 C A:VAL531 4.9 12.5 1.0 C C:VAL531 4.9 11.3 1.0 HG13 A:VAL531 4.9 13.0 1.0 C B:VAL531 4.9 12.7 1.0

Chlorine binding site 2 out of 2 in the Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl601 b:11.7 occ:1.00 HD22 E:ASN534 2.3 14.6 1.0 HD22 F:ASN534 2.3 14.4 1.0 HD22 D:ASN534 2.4 13.9 1.0 ND2 E:ASN534 3.1 12.1 1.0 ND2 F:ASN534 3.1 12.0 1.0 HG23 F:VAL531 3.2 15.5 1.0 HG23 E:VAL531 3.2 15.9 1.0 HG13 E:VAL531 3.2 16.3 1.0 ND2 D:ASN534 3.2 11.5 1.0 HG22 D:VAL531 3.2 13.0 1.0 HG11 F:VAL531 3.3 17.0 1.0 HA E:VAL531 3.3 16.6 1.0 HA F:VAL531 3.3 14.5 1.0 HA D:VAL531 3.3 15.1 1.0 HB2 D:ASN534 3.4 13.0 1.0 HB2 E:ASN534 3.4 13.5 1.0 HG11 D:VAL531 3.4 17.2 1.0 HB2 F:ASN534 3.5 11.2 1.0 HD21 F:ASN534 3.6 14.4 1.0 HD21 E:ASN534 3.6 14.6 1.0 HB3 D:ASN534 3.7 13.0 1.0 HB3 E:ASN534 3.7 13.5 1.0 HB3 F:ASN534 3.7 11.2 1.0 HD21 D:ASN534 3.7 13.9 1.0 CB D:ASN534 3.9 10.8 1.0 CB E:ASN534 3.9 11.2 1.0 CB F:ASN534 3.9 9.3 1.0 CG1 F:VAL531 4.0 14.1 1.0 CG1 E:VAL531 4.0 13.5 1.0 HG12 D:VAL531 4.0 17.2 1.0 CG E:ASN534 4.0 11.9 1.0 HG12 F:VAL531 4.0 17.0 1.0 CG D:ASN534 4.0 10.9 1.0 CG1 D:VAL531 4.0 14.3 1.0 CG2 F:VAL531 4.0 12.9 1.0 CG F:ASN534 4.1 14.5 1.0 CG2 E:VAL531 4.1 13.2 1.0 CG2 D:VAL531 4.1 10.7 1.0 CA E:VAL531 4.1 13.7 1.0 CA F:VAL531 4.2 12.0 1.0 CA D:VAL531 4.2 12.5 1.0 HG11 E:VAL531 4.2 16.3 1.0 CB E:VAL531 4.3 13.4 1.0 CB F:VAL531 4.3 10.9 1.0 CB D:VAL531 4.3 13.1 1.0 HG21 F:VAL531 4.5 15.5 1.0 HG21 E:VAL531 4.5 15.9 1.0 O E:VAL531 4.5 10.3 1.0 O F:VAL531 4.5 11.5 1.0 HG21 D:VAL531 4.6 13.0 1.0 O D:VAL531 4.6 11.5 1.0 HG22 F:VAL531 4.7 15.5 1.0 HG22 E:VAL531 4.7 15.9 1.0 HG23 D:VAL531 4.7 13.0 1.0 HG12 E:VAL531 4.8 16.3 1.0 HG13 F:VAL531 4.8 17.0 1.0 C E:VAL531 4.9 16.3 1.0 C F:VAL531 4.9 13.0 1.0 C D:VAL531 4.9 13.0 1.0 HG13 D:VAL531 4.9 17.2 1.0

T.T.Dean, V.H.B.Serrao, J.E.Lee. Structure of the Core Postfusion Porcine Endogenous Retrovirus Fusion Protein. Mbio V. 13 92021 2022.
ISSN: ESSN 2150-7511
PubMed: 35073741
DOI: 10.1128/MBIO.02920-21