Chlorine in PDB 7sbj: Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A

Enzymatic activity of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A

All present enzymatic activity of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A:
5.1.3.1;

Protein crystallography data

The structure of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A, PDB code: 7sbj was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.74 / 1.85
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 83.89, 136.48, 148.74, 90, 90, 90
R / Rfree (%) 14.8 / 17.9

Other elements in 7sbj:

The structure of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A (pdb code 7sbj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A, PDB code: 7sbj:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 7sbj

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Chlorine binding site 1 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


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Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:17.5
occ:1.00
 O A:HOH414 2.8 28.3 1.0
O C:HOH533 3.0 15.1 1.0
N A:ALA120 3.2 11.1 1.0
N C:HIS100 3.2 9.9 1.0
CB A:ALA120 3.4 13.3 1.0
N C:VAL99 3.5 10.0 1.0
CB C:HIS100 3.5 12.3 1.0
CB A:ASN118 3.6 11.7 1.0
CD A:PRO119 3.6 13.3 1.0
N A:PRO119 3.7 11.2 1.0
OD1 A:ASN142 3.8 26.9 1.0
CA A:ALA120 3.9 10.5 1.0
C C:HIS98 4.0 12.9 1.0
CA C:HIS100 4.0 11.4 1.0
CB A:PRO119 4.1 11.7 1.0
CA C:HIS98 4.1 14.8 1.0
C A:PRO119 4.1 9.8 1.0
C C:VAL99 4.2 10.6 1.0
C A:ASN118 4.2 11.0 1.0
CA A:PRO119 4.2 10.9 1.0
CA C:VAL99 4.2 9.0 1.0
CG A:PRO119 4.3 13.8 1.0
CB C:VAL99 4.4 12.3 1.0
CA A:ASN118 4.5 13.7 1.0
CG A:ASN118 4.6 14.9 1.0
O A:HOH456 4.7 27.3 1.0
O C:HIS98 4.7 10.6 1.0
C A:ALA120 4.8 14.2 1.0
CB C:HIS98 4.8 12.6 1.0
ND2 A:ASN118 4.8 19.7 1.0
N A:THR121 4.9 11.8 1.0
N C:ARG101 4.9 12.2 1.0
O A:ASN118 4.9 10.0 1.0
CG C:HIS100 4.9 16.8 1.0

Chlorine binding site 2 out of 9 in 7sbj

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Chlorine binding site 2 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


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Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:45.3
occ:1.00
 NE A:ARG101 3.2 17.8 1.0
CG A:GLN104 3.8 19.7 0.5
NH2 A:ARG101 3.9 21.0 1.0
CZ A:ARG101 4.0 22.4 1.0
CD A:GLN104 4.0 26.7 0.5
CG A:ARG101 4.0 17.4 1.0
N A:LEU105 4.1 13.3 1.0
CD A:ARG101 4.1 18.5 1.0
CA A:LEU105 4.2 13.0 1.0
NE2 A:GLN104 4.2 32.5 0.5
O A:ARG101 4.2 11.8 1.0
CB A:GLN104 4.2 16.6 0.5
CB A:GLN104 4.3 16.7 0.5
OE1 A:GLN104 4.3 24.7 0.5
CB A:LEU105 4.4 12.8 1.0
C A:GLN104 4.4 14.5 1.0
OE1 A:GLN104 4.6 28.6 0.5
O A:GLN104 4.7 12.3 1.0
CD1 A:LEU105 4.8 13.4 1.0

Chlorine binding site 3 out of 9 in 7sbj

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Chlorine binding site 3 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:27.4
occ:1.00
 ND2 A:ASN45 3.5 22.4 1.0
N A:GLY146 3.6 32.0 1.0
CE A:MET38 3.8 17.9 1.0
CA A:GLY146 3.8 41.2 1.0
C A:GLY144 3.8 25.2 1.0
CA A:GLY144 3.9 19.0 1.0
O A:GLY144 4.0 24.0 1.0
O A:HOH406 4.2 41.1 1.0
SD A:MET38 4.2 12.6 1.0
O A:HOH575 4.2 38.2 1.0
N A:PHE145 4.3 21.7 1.0
N A:GLY144 4.5 22.2 1.0
CG A:ASN45 4.6 21.1 1.0
O A:HOH519 4.6 36.7 1.0
C A:PHE145 4.6 32.2 1.0
CD1 A:LEU11 4.8 30.1 1.0
CB A:ASN45 4.8 11.8 1.0
C A:GLY146 4.8 44.0 1.0
CA A:PHE145 4.9 22.8 1.0

Chlorine binding site 4 out of 9 in 7sbj

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Chlorine binding site 4 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:17.4
occ:1.00
 O B:HOH428 2.9 23.9 1.0
N B:ALA120 3.2 12.1 1.0
CB B:ALA120 3.4 14.1 1.0
CB B:ASN118 3.6 11.6 1.0
CD B:PRO119 3.7 12.8 1.0
N B:PRO119 3.8 11.1 1.0
OD1 B:ASN142 3.8 26.1 1.0
CA B:ALA120 3.9 12.7 1.0
C B:PRO119 4.1 13.3 1.0
CB B:PRO119 4.2 13.8 1.0
C B:ASN118 4.2 10.7 1.0
CA B:PRO119 4.2 11.6 1.0
CG B:PRO119 4.4 13.2 1.0
CG B:ASN118 4.5 15.9 1.0
CA B:ASN118 4.5 9.2 1.0
O B:HOH430 4.7 27.2 1.0
C B:ALA120 4.8 15.4 1.0
ND2 B:ASN118 4.8 16.3 1.0
N B:THR121 4.8 11.0 1.0
O B:ASN118 4.8 9.9 1.0

Chlorine binding site 5 out of 9 in 7sbj

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Chlorine binding site 5 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


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Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:49.3
occ:1.00
 NE B:ARG101 3.3 19.0 1.0
CG B:GLN104 3.8 14.6 0.5
NH2 B:ARG101 4.0 22.0 1.0
N B:LEU105 4.0 9.3 1.0
CD B:GLN104 4.1 24.5 0.5
CZ B:ARG101 4.1 21.2 1.0
CA B:LEU105 4.1 11.5 1.0
CG B:ARG101 4.1 15.7 1.0
CB B:GLN104 4.2 13.1 0.5
CD B:ARG101 4.2 15.8 1.0
O B:ARG101 4.2 8.1 1.0
CB B:GLN104 4.3 13.1 0.5
OE1 B:GLN104 4.3 25.0 0.5
CB B:LEU105 4.4 9.8 1.0
C B:GLN104 4.4 13.4 1.0
NE2 B:GLN104 4.4 30.0 0.5
OE1 B:GLN104 4.5 23.3 0.5
O B:GLN104 4.7 11.2 1.0
CD1 B:LEU105 4.9 13.0 1.0
CA B:GLN104 5.0 12.4 0.5
CA B:GLN104 5.0 12.3 0.5

Chlorine binding site 6 out of 9 in 7sbj

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Chlorine binding site 6 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl306

b:27.2
occ:1.00
 ND2 B:ASN45 3.6 22.6 1.0
N B:GLY146 3.7 38.5 1.0
CE B:MET38 3.8 14.4 1.0
O B:HOH564 3.8 24.5 0.6
C B:GLY144 3.9 29.1 1.0
CA B:GLY146 3.9 51.6 1.0
CA B:GLY144 3.9 23.0 1.0
O B:GLY144 4.1 26.7 1.0
SD B:MET38 4.2 11.8 1.0
O B:HOH405 4.3 39.1 1.0
N B:PHE145 4.4 26.5 1.0
N B:GLY144 4.5 22.3 1.0
CD1 B:LEU11 4.5 25.7 1.0
CG B:ASN45 4.7 21.3 1.0
O B:HOH503 4.7 35.0 1.0
C B:PHE145 4.7 36.6 1.0
CB B:ASN45 4.8 12.5 1.0
C B:GLY146 4.9 54.9 1.0

Chlorine binding site 7 out of 9 in 7sbj

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Chlorine binding site 7 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl304

b:16.1
occ:1.00
 O C:HOH455 2.8 25.7 1.0
N C:ALA120 3.2 9.7 1.0
CB C:ALA120 3.6 11.5 1.0
CD C:PRO119 3.6 10.4 1.0
CB C:ASN118 3.7 10.9 1.0
N C:PRO119 3.7 8.8 1.0
OD1 C:ASN142 3.8 24.7 1.0
CA C:ALA120 4.0 10.4 1.0
CB C:PRO119 4.1 10.4 1.0
C C:PRO119 4.1 12.5 1.0
C C:ASN118 4.2 8.8 1.0
CA C:PRO119 4.2 9.1 1.0
CG C:PRO119 4.2 12.4 1.0
CA C:ASN118 4.6 9.3 1.0
CG C:ASN118 4.6 14.2 1.0
O C:HOH458 4.7 26.8 1.0
ND2 C:ASN118 4.9 16.8 1.0
C C:ALA120 4.9 12.3 1.0
O C:ASN118 4.9 10.2 1.0
N C:THR121 4.9 9.7 1.0
CG C:ASN142 5.0 25.9 1.0

Chlorine binding site 8 out of 9 in 7sbj

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Chlorine binding site 8 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl305

b:47.0
occ:1.00
 NE C:ARG101 3.5 18.8 1.0
CG C:GLN104 3.6 18.0 0.5
N C:LEU105 4.0 11.4 1.0
CA C:LEU105 4.0 11.5 1.0
NH2 C:ARG101 4.0 19.8 1.0
CD C:GLN104 4.1 25.1 0.5
NE2 C:GLN104 4.1 31.8 0.5
O A:HOH480 4.1 39.0 1.0
CZ C:ARG101 4.2 24.9 1.0
CB C:GLN104 4.3 14.0 0.5
O C:HOH409 4.3 42.2 1.0
C C:GLN104 4.3 11.4 1.0
CB C:LEU105 4.3 9.4 1.0
CB C:GLN104 4.3 14.0 0.5
O C:ARG101 4.4 11.0 1.0
CD C:ARG101 4.4 21.4 1.0
CG C:ARG101 4.4 18.3 1.0
O C:GLN104 4.5 13.9 1.0
CD1 C:LEU105 4.7 12.9 1.0
OE1 C:GLN104 4.8 26.2 0.5
OG C:SER108 4.8 14.8 1.0
OE1 C:GLN104 4.9 25.4 0.5
CA C:GLN104 5.0 12.4 0.5
CA C:GLN104 5.0 12.4 0.5

Chlorine binding site 9 out of 9 in 7sbj

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Chlorine binding site 9 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl306

b:27.2
occ:1.00
 ND2 C:ASN45 3.6 20.7 1.0
N C:GLY146 3.6 31.8 1.0
CE C:MET38 3.7 16.9 1.0
CA C:GLY146 3.8 41.6 1.0
C C:GLY144 3.9 24.6 1.0
CA C:GLY144 3.9 20.3 1.0
O C:GLY144 4.0 24.4 1.0
SD C:MET38 4.2 12.1 1.0
N C:PHE145 4.4 23.2 1.0
N C:GLY144 4.5 17.6 1.0
O C:HOH510 4.6 30.6 1.0
CD1 C:LEU11 4.6 29.7 1.0
CG C:ASN45 4.7 19.2 1.0
C C:PHE145 4.7 27.1 1.0
C C:GLY146 4.8 39.1 1.0
CB C:ASN45 4.8 13.1 1.0

Reference:

J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A To Be Published.
Page generated: Fri Nov 5 12:43:19 2021

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