Chlorine in PDB 7sbj: Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A

Enzymatic activity of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A

All present enzymatic activity of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A:
5.1.3.1;

Protein crystallography data

The structure of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A, PDB code: 7sbj was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.74 / 1.85
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 83.89, 136.48, 148.74, 90, 90, 90
R / Rfree (%) 14.8 / 17.9

Other elements in 7sbj:

The structure of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A (pdb code 7sbj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A, PDB code: 7sbj:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 7sbj

Go back to Chlorine Binding Sites List in 7sbj
Chlorine binding site 1 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:17.5
occ:1.00
 O A:HOH414 2.8 28.3 1.0
O C:HOH533 3.0 15.1 1.0
N A:ALA120 3.2 11.1 1.0
N C:HIS100 3.2 9.9 1.0
CB A:ALA120 3.4 13.3 1.0
N C:VAL99 3.5 10.0 1.0
CB C:HIS100 3.5 12.3 1.0
CB A:ASN118 3.6 11.7 1.0
CD A:PRO119 3.6 13.3 1.0
N A:PRO119 3.7 11.2 1.0
OD1 A:ASN142 3.8 26.9 1.0
CA A:ALA120 3.9 10.5 1.0
C C:HIS98 4.0 12.9 1.0
CA C:HIS100 4.0 11.4 1.0
CB A:PRO119 4.1 11.7 1.0
CA C:HIS98 4.1 14.8 1.0
C A:PRO119 4.1 9.8 1.0
C C:VAL99 4.2 10.6 1.0
C A:ASN118 4.2 11.0 1.0
CA A:PRO119 4.2 10.9 1.0
CA C:VAL99 4.2 9.0 1.0
CG A:PRO119 4.3 13.8 1.0
CB C:VAL99 4.4 12.3 1.0
CA A:ASN118 4.5 13.7 1.0
CG A:ASN118 4.6 14.9 1.0
O A:HOH456 4.7 27.3 1.0
O C:HIS98 4.7 10.6 1.0
C A:ALA120 4.8 14.2 1.0
CB C:HIS98 4.8 12.6 1.0
ND2 A:ASN118 4.8 19.7 1.0
N A:THR121 4.9 11.8 1.0
N C:ARG101 4.9 12.2 1.0
O A:ASN118 4.9 10.0 1.0
CG C:HIS100 4.9 16.8 1.0

Chlorine binding site 2 out of 9 in 7sbj

Go back to Chlorine Binding Sites List in 7sbj
Chlorine binding site 2 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl305

b:45.3
occ:1.00
 NE A:ARG101 3.2 17.8 1.0
CG A:GLN104 3.8 19.7 0.5
NH2 A:ARG101 3.9 21.0 1.0
CZ A:ARG101 4.0 22.4 1.0
CD A:GLN104 4.0 26.7 0.5
CG A:ARG101 4.0 17.4 1.0
N A:LEU105 4.1 13.3 1.0
CD A:ARG101 4.1 18.5 1.0
CA A:LEU105 4.2 13.0 1.0
NE2 A:GLN104 4.2 32.5 0.5
O A:ARG101 4.2 11.8 1.0
CB A:GLN104 4.2 16.6 0.5
CB A:GLN104 4.3 16.7 0.5
OE1 A:GLN104 4.3 24.7 0.5
CB A:LEU105 4.4 12.8 1.0
C A:GLN104 4.4 14.5 1.0
OE1 A:GLN104 4.6 28.6 0.5
O A:GLN104 4.7 12.3 1.0
CD1 A:LEU105 4.8 13.4 1.0

Chlorine binding site 3 out of 9 in 7sbj

Go back to Chlorine Binding Sites List in 7sbj
Chlorine binding site 3 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:27.4
occ:1.00
 ND2 A:ASN45 3.5 22.4 1.0
N A:GLY146 3.6 32.0 1.0
CE A:MET38 3.8 17.9 1.0
CA A:GLY146 3.8 41.2 1.0
C A:GLY144 3.8 25.2 1.0
CA A:GLY144 3.9 19.0 1.0
O A:GLY144 4.0 24.0 1.0
O A:HOH406 4.2 41.1 1.0
SD A:MET38 4.2 12.6 1.0
O A:HOH575 4.2 38.2 1.0
N A:PHE145 4.3 21.7 1.0
N A:GLY144 4.5 22.2 1.0
CG A:ASN45 4.6 21.1 1.0
O A:HOH519 4.6 36.7 1.0
C A:PHE145 4.6 32.2 1.0
CD1 A:LEU11 4.8 30.1 1.0
CB A:ASN45 4.8 11.8 1.0
C A:GLY146 4.8 44.0 1.0
CA A:PHE145 4.9 22.8 1.0

Chlorine binding site 4 out of 9 in 7sbj

Go back to Chlorine Binding Sites List in 7sbj
Chlorine binding site 4 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:17.4
occ:1.00
 O B:HOH428 2.9 23.9 1.0
N B:ALA120 3.2 12.1 1.0
CB B:ALA120 3.4 14.1 1.0
CB B:ASN118 3.6 11.6 1.0
CD B:PRO119 3.7 12.8 1.0
N B:PRO119 3.8 11.1 1.0
OD1 B:ASN142 3.8 26.1 1.0
CA B:ALA120 3.9 12.7 1.0
C B:PRO119 4.1 13.3 1.0
CB B:PRO119 4.2 13.8 1.0
C B:ASN118 4.2 10.7 1.0
CA B:PRO119 4.2 11.6 1.0
CG B:PRO119 4.4 13.2 1.0
CG B:ASN118 4.5 15.9 1.0
CA B:ASN118 4.5 9.2 1.0
O B:HOH430 4.7 27.2 1.0
C B:ALA120 4.8 15.4 1.0
ND2 B:ASN118 4.8 16.3 1.0
N B:THR121 4.8 11.0 1.0
O B:ASN118 4.8 9.9 1.0

Chlorine binding site 5 out of 9 in 7sbj

Go back to Chlorine Binding Sites List in 7sbj
Chlorine binding site 5 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:49.3
occ:1.00
 NE B:ARG101 3.3 19.0 1.0
CG B:GLN104 3.8 14.6 0.5
NH2 B:ARG101 4.0 22.0 1.0
N B:LEU105 4.0 9.3 1.0
CD B:GLN104 4.1 24.5 0.5
CZ B:ARG101 4.1 21.2 1.0
CA B:LEU105 4.1 11.5 1.0
CG B:ARG101 4.1 15.7 1.0
CB B:GLN104 4.2 13.1 0.5
CD B:ARG101 4.2 15.8 1.0
O B:ARG101 4.2 8.1 1.0
CB B:GLN104 4.3 13.1 0.5
OE1 B:GLN104 4.3 25.0 0.5
CB B:LEU105 4.4 9.8 1.0
C B:GLN104 4.4 13.4 1.0
NE2 B:GLN104 4.4 30.0 0.5
OE1 B:GLN104 4.5 23.3 0.5
O B:GLN104 4.7 11.2 1.0
CD1 B:LEU105 4.9 13.0 1.0
CA B:GLN104 5.0 12.4 0.5
CA B:GLN104 5.0 12.3 0.5

Chlorine binding site 6 out of 9 in 7sbj

Go back to Chlorine Binding Sites List in 7sbj
Chlorine binding site 6 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl306

b:27.2
occ:1.00
 ND2 B:ASN45 3.6 22.6 1.0
N B:GLY146 3.7 38.5 1.0
CE B:MET38 3.8 14.4 1.0
O B:HOH564 3.8 24.5 0.6
C B:GLY144 3.9 29.1 1.0
CA B:GLY146 3.9 51.6 1.0
CA B:GLY144 3.9 23.0 1.0
O B:GLY144 4.1 26.7 1.0
SD B:MET38 4.2 11.8 1.0
O B:HOH405 4.3 39.1 1.0
N B:PHE145 4.4 26.5 1.0
N B:GLY144 4.5 22.3 1.0
CD1 B:LEU11 4.5 25.7 1.0
CG B:ASN45 4.7 21.3 1.0
O B:HOH503 4.7 35.0 1.0
C B:PHE145 4.7 36.6 1.0
CB B:ASN45 4.8 12.5 1.0
C B:GLY146 4.9 54.9 1.0

Chlorine binding site 7 out of 9 in 7sbj

Go back to Chlorine Binding Sites List in 7sbj
Chlorine binding site 7 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl304

b:16.1
occ:1.00
 O C:HOH455 2.8 25.7 1.0
N C:ALA120 3.2 9.7 1.0
CB C:ALA120 3.6 11.5 1.0
CD C:PRO119 3.6 10.4 1.0
CB C:ASN118 3.7 10.9 1.0
N C:PRO119 3.7 8.8 1.0
OD1 C:ASN142 3.8 24.7 1.0
CA C:ALA120 4.0 10.4 1.0
CB C:PRO119 4.1 10.4 1.0
C C:PRO119 4.1 12.5 1.0
C C:ASN118 4.2 8.8 1.0
CA C:PRO119 4.2 9.1 1.0
CG C:PRO119 4.2 12.4 1.0
CA C:ASN118 4.6 9.3 1.0
CG C:ASN118 4.6 14.2 1.0
O C:HOH458 4.7 26.8 1.0
ND2 C:ASN118 4.9 16.8 1.0
C C:ALA120 4.9 12.3 1.0
O C:ASN118 4.9 10.2 1.0
N C:THR121 4.9 9.7 1.0
CG C:ASN142 5.0 25.9 1.0

Chlorine binding site 8 out of 9 in 7sbj

Go back to Chlorine Binding Sites List in 7sbj
Chlorine binding site 8 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl305

b:47.0
occ:1.00
 NE C:ARG101 3.5 18.8 1.0
CG C:GLN104 3.6 18.0 0.5
N C:LEU105 4.0 11.4 1.0
CA C:LEU105 4.0 11.5 1.0
NH2 C:ARG101 4.0 19.8 1.0
CD C:GLN104 4.1 25.1 0.5
NE2 C:GLN104 4.1 31.8 0.5
O A:HOH480 4.1 39.0 1.0
CZ C:ARG101 4.2 24.9 1.0
CB C:GLN104 4.3 14.0 0.5
O C:HOH409 4.3 42.2 1.0
C C:GLN104 4.3 11.4 1.0
CB C:LEU105 4.3 9.4 1.0
CB C:GLN104 4.3 14.0 0.5
O C:ARG101 4.4 11.0 1.0
CD C:ARG101 4.4 21.4 1.0
CG C:ARG101 4.4 18.3 1.0
O C:GLN104 4.5 13.9 1.0
CD1 C:LEU105 4.7 12.9 1.0
OE1 C:GLN104 4.8 26.2 0.5
OG C:SER108 4.8 14.8 1.0
OE1 C:GLN104 4.9 25.4 0.5
CA C:GLN104 5.0 12.4 0.5
CA C:GLN104 5.0 12.4 0.5

Chlorine binding site 9 out of 9 in 7sbj

Go back to Chlorine Binding Sites List in 7sbj
Chlorine binding site 9 out of 9 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl306

b:27.2
occ:1.00
 ND2 C:ASN45 3.6 20.7 1.0
N C:GLY146 3.6 31.8 1.0
CE C:MET38 3.7 16.9 1.0
CA C:GLY146 3.8 41.6 1.0
C C:GLY144 3.9 24.6 1.0
CA C:GLY144 3.9 20.3 1.0
O C:GLY144 4.0 24.4 1.0
SD C:MET38 4.2 12.1 1.0
N C:PHE145 4.4 23.2 1.0
N C:GLY144 4.5 17.6 1.0
O C:HOH510 4.6 30.6 1.0
CD1 C:LEU11 4.6 29.7 1.0
CG C:ASN45 4.7 19.2 1.0
C C:PHE145 4.7 27.1 1.0
C C:GLY146 4.8 39.1 1.0
CB C:ASN45 4.8 13.1 1.0

Reference:

J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Ribulose-Phosphate 3-Epimerase From Stenotrophomonas Maltophilia K279A To Be Published.
Page generated: Fri Nov 5 12:43:19 2021

Last articles

Cl in 6COG
Cl in 6CST
Cl in 6CTW
Cl in 6CTZ
Cl in 6CTT
Cl in 6CSP
Cl in 6CU9
Cl in 6CTX
Cl in 6CTU
Cl in 6CTP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy