Chlorine in PDB 7sf2: Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus

Protein crystallography data

The structure of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus, PDB code: 7sf2 was solved by Y.Kim, G.Joachimiak, M.Endres, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.10 / 2.75
Space group F 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 335.847, 349.396, 352.108, 90, 90, 90
R / Rfree (%) 18.2 / 20.9

Other elements in 7sf2:

The structure of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Chlorine atom in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus (pdb code 7sf2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 14 binding sites of Chlorine where determined in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus, PDB code: 7sf2:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 14 in 7sf2

Go back to Chlorine Binding Sites List in 7sf2
Chlorine binding site 1 out of 14 in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl704

b:39.3
occ:1.00
 N A:GLY263 3.2 21.2 1.0
O A:HOH944 3.3 21.8 1.0
CA A:GLY263 3.4 22.3 1.0
O A:HOH961 3.6 24.8 1.0
CG2 A:VAL244 3.7 20.3 1.0
C A:ILE261 3.9 20.7 1.0
O A:ASP242 3.9 26.0 1.0
CA A:ILE261 4.0 21.1 1.0
O A:SER260 4.0 16.7 1.0
N A:ASN262 4.1 18.7 1.0
C A:GLY263 4.2 21.3 1.0
O A:ILE261 4.2 21.8 1.0
OG A:SER260 4.3 27.0 1.0
C A:ASP242 4.3 27.4 1.0
N A:GLU264 4.3 24.2 1.0
CB A:ASP242 4.4 30.5 1.0
CB A:VAL244 4.4 18.5 1.0
O A:HOH818 4.4 27.0 1.0
C A:ASN262 4.4 22.9 1.0
C A:SER260 4.5 18.0 1.0
N A:ILE261 4.5 20.0 1.0
O A:HOH1004 4.5 16.0 1.0
N A:VAL244 4.5 16.2 1.0
O A:GLU264 4.7 21.4 1.0
N A:PHE243 4.7 20.4 1.0
CA A:PHE243 4.9 20.2 1.0
C A:PHE243 4.9 21.0 1.0
CA A:ASN262 4.9 18.6 1.0
O A:HOH815 5.0 30.4 1.0

Chlorine binding site 2 out of 14 in 7sf2

Go back to Chlorine Binding Sites List in 7sf2
Chlorine binding site 2 out of 14 in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl718

b:57.4
occ:1.00
 O A:HOH1085 3.2 33.9 1.0
N A:ARG406 3.3 25.3 1.0
N A:ASN405 3.6 24.9 1.0
CA A:GLN404 3.7 21.4 1.0
CG A:LYS407 3.7 22.0 1.0
C A:GLN404 3.8 20.8 1.0
OD1 A:ASN405 3.8 30.6 1.0
CB A:ARG406 3.8 22.1 1.0
N A:LYS407 3.9 21.2 1.0
CA A:ARG406 3.9 25.8 1.0
NZ A:LYS407 4.0 55.2 1.0
CB A:GLN404 4.0 21.1 1.0
C A:ARG406 4.1 21.4 1.0
C A:ASN405 4.3 21.6 1.0
CA A:ASN405 4.5 22.8 1.0
O A:GLN404 4.5 21.6 1.0
CB A:LYS407 4.5 21.9 1.0
CE A:LYS407 4.6 42.3 1.0
CD A:LYS407 4.6 30.6 1.0
CG A:ARG406 4.7 22.1 1.0
O A:HOH1042 4.7 24.1 1.0
CG A:ASN405 4.8 24.5 1.0
CA A:LYS407 4.8 30.4 1.0
CG A:GLN404 4.8 21.5 1.0
O A:ARG406 5.0 24.9 1.0

Chlorine binding site 3 out of 14 in 7sf2

Go back to Chlorine Binding Sites List in 7sf2
Chlorine binding site 3 out of 14 in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl719

b:51.4
occ:1.00
 OG A:SER115 3.1 47.5 1.0
N A:SER115 3.3 24.9 1.0
CB A:PRO114 3.8 20.3 1.0
CA A:PRO114 3.9 20.9 1.0
N A:ALA116 4.0 24.5 1.0
C A:PRO114 4.0 21.4 1.0
CB A:SER115 4.1 25.2 1.0
CA A:SER115 4.1 26.4 1.0
C A:SER115 4.6 23.1 1.0
CB A:ALA116 4.8 22.4 1.0

Chlorine binding site 4 out of 14 in 7sf2

Go back to Chlorine Binding Sites List in 7sf2
Chlorine binding site 4 out of 14 in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl720

b:70.2
occ:1.00
 N A:GLY119 3.3 24.7 1.0
O A:LYS120 3.6 30.4 1.0
O A:TRP117 3.9 21.5 1.0
CA A:ARG118 4.0 21.2 1.0
CA A:GLY119 4.1 24.8 1.0
C A:ARG118 4.1 26.2 1.0
N A:LYS120 4.1 21.5 1.0
CG2 A:THR157 4.3 17.3 1.0
C A:GLY119 4.4 30.0 1.0
C A:LYS120 4.7 23.3 1.0
C A:TRP117 4.7 27.2 1.0
CD1 A:LEU160 4.8 21.5 1.0
O A:HOH1069 4.8 28.8 1.0
N A:ARG118 4.8 27.0 1.0
CG A:ARG118 4.9 46.9 1.0

Chlorine binding site 5 out of 14 in 7sf2

Go back to Chlorine Binding Sites List in 7sf2
Chlorine binding site 5 out of 14 in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl704

b:38.2
occ:1.00
 O B:HOH908 3.1 25.2 1.0
N B:GLY263 3.3 28.5 1.0
CA B:GLY263 3.5 19.4 1.0
O B:HOH896 3.6 27.9 1.0
CG2 B:VAL244 3.7 14.5 1.0
C B:ILE261 3.8 18.0 1.0
CA B:ILE261 3.9 19.8 1.0
O B:SER260 3.9 22.9 1.0
O B:ASP242 4.0 28.2 1.0
OG B:SER260 4.1 41.9 1.0
C B:GLY263 4.1 23.1 1.0
O B:ILE261 4.2 24.2 1.0
N B:ASN262 4.2 22.6 1.0
O B:HOH1004 4.2 22.4 1.0
O B:HOH835 4.3 30.6 1.0
N B:GLU264 4.3 23.8 1.0
CB B:VAL244 4.3 15.1 1.0
C B:SER260 4.3 26.9 1.0
N B:ILE261 4.4 24.1 1.0
C B:ASP242 4.4 23.6 1.0
C B:ASN262 4.5 27.4 1.0
O B:GLU264 4.5 25.9 1.0
CB B:ASP242 4.5 32.3 1.0
N B:VAL244 4.5 16.7 1.0
N B:PHE243 4.8 26.5 1.0
C B:PHE243 4.9 17.1 1.0
CA B:PHE243 4.9 19.1 1.0
CA B:ASN262 4.9 27.4 1.0
O B:GLY263 5.0 25.6 1.0
O B:HOH812 5.0 36.6 1.0

Chlorine binding site 6 out of 14 in 7sf2

Go back to Chlorine Binding Sites List in 7sf2
Chlorine binding site 6 out of 14 in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl721

b:66.5
occ:1.00
 N B:GLY119 3.5 33.7 1.0
O B:TRP117 3.7 31.1 1.0
O B:LYS120 3.8 32.7 1.0
CA B:ARG118 3.9 26.8 0.6
CA B:ARG118 4.0 26.9 0.4
C B:ARG118 4.2 33.6 0.6
C B:ARG118 4.2 33.6 0.4
CA B:GLY119 4.4 27.2 1.0
N B:LYS120 4.4 26.4 1.0
C B:TRP117 4.5 26.8 1.0
C B:GLY119 4.6 32.3 1.0
CD1 B:LEU160 4.7 26.7 1.0
N B:ARG118 4.7 26.7 0.6
CG2 B:THR157 4.7 22.1 1.0
N B:ARG118 4.7 26.7 0.4
CG B:ARG118 4.8 37.5 0.6
C B:LYS120 4.8 22.5 1.0
CB B:ARG118 4.9 30.3 0.6
CG B:ARG118 4.9 37.3 0.4
CB B:ARG118 5.0 30.3 0.4

Chlorine binding site 7 out of 14 in 7sf2

Go back to Chlorine Binding Sites List in 7sf2
Chlorine binding site 7 out of 14 in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl722

b:56.9
occ:1.00
 O B:HOH968 3.5 30.3 1.0
O B:HOH941 3.7 28.8 1.0
O B:GLU89 4.1 25.3 1.0
O B:ALA25 4.2 46.0 1.0
CG B:ARG28 4.3 43.3 1.0
O B:HOH1058 4.4 28.6 1.0
CB B:SER91 4.4 27.2 1.0
N B:SER91 4.5 35.0 1.0
CA B:SER91 4.5 27.8 1.0
CA B:GLY26 4.6 45.9 1.0
C B:SER90 4.8 30.9 1.0
CH2 B:TRP523 4.8 40.1 1.0
C B:ALA25 4.9 38.3 1.0

Chlorine binding site 8 out of 14 in 7sf2

Go back to Chlorine Binding Sites List in 7sf2
Chlorine binding site 8 out of 14 in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl714

b:67.6
occ:1.00
 OE1 C:GLN181 3.2 24.6 1.0
O2 C:EDO710 3.3 54.4 1.0
CH2 C:TRP131 3.8 24.1 1.0
CD C:PRO180 3.8 24.0 1.0
CZ3 C:TRP131 3.8 21.7 1.0
CB C:GLN181 4.0 19.3 1.0
CG C:PRO175 4.0 20.6 1.0
CD C:GLN181 4.1 23.6 1.0
CE2 C:TYR423 4.1 36.0 1.0
CZ3 C:TRP173 4.2 21.6 1.0
CZ2 C:TRP131 4.2 22.1 1.0
CE3 C:TRP131 4.3 19.9 1.0
N C:GLN181 4.3 24.2 1.0
CH2 C:TRP173 4.3 23.0 1.0
N C:PRO180 4.4 30.5 1.0
CA C:GLY179 4.4 26.3 1.0
CG C:GLN181 4.4 23.0 1.0
CD2 C:TYR423 4.6 32.3 1.0
CG C:PRO180 4.6 24.9 1.0
C2 C:EDO710 4.7 63.2 1.0
CE2 C:TRP131 4.7 22.1 1.0
C C:GLY179 4.7 32.1 1.0
CD2 C:TRP131 4.7 20.1 1.0
CA C:GLN181 4.7 19.6 1.0
CD C:PRO175 4.8 19.5 1.0
CZ C:TYR423 4.9 38.8 1.0

Chlorine binding site 9 out of 14 in 7sf2

Go back to Chlorine Binding Sites List in 7sf2
Chlorine binding site 9 out of 14 in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl715

b:74.9
occ:1.00
 CE C:LYS70 3.4 43.6 1.0
NZ C:LYS132 3.7 66.0 1.0
CD C:LYS132 3.7 41.2 1.0
CE3 C:TRP173 3.7 22.7 1.0
NZ C:LYS70 3.7 48.9 1.0
CD2 C:TRP173 3.8 21.8 1.0
CG C:TRP173 4.1 21.8 1.0
CE C:LYS132 4.1 42.5 1.0
CB C:TRP173 4.3 20.6 1.0
CZ3 C:TRP173 4.3 21.6 1.0
CE2 C:TRP173 4.4 27.4 1.0
OE2 C:GLU104 4.4 53.7 1.0
CD C:LYS70 4.7 38.2 1.0
CD1 C:TRP173 4.8 23.4 1.0
CH2 C:TRP173 4.9 23.0 1.0
CG C:LYS132 5.0 25.0 1.0
CZ2 C:TRP173 5.0 25.8 1.0
NE1 C:TRP173 5.0 24.3 1.0

Chlorine binding site 10 out of 14 in 7sf2

Go back to Chlorine Binding Sites List in 7sf2
Chlorine binding site 10 out of 14 in the Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl716

b:61.5
occ:1.00
 O C:HOH976 3.1 41.0 1.0
N C:GLY263 3.2 31.1 1.0
CA C:GLY263 3.5 29.8 1.0
O C:SER260 3.8 28.7 1.0
CG2 C:VAL244 3.8 24.3 1.0
C C:ILE261 3.8 25.3 1.0
CA C:ILE261 3.9 23.7 1.0
C C:GLY263 4.1 27.3 1.0
N C:ASN262 4.1 33.1 1.0
O C:ASP242 4.1 41.1 1.0
N C:GLU264 4.1 29.9 1.0
O C:ILE261 4.2 34.1 1.0
C C:SER260 4.2 26.4 1.0
O C:GLU264 4.3 44.4 1.0
N C:ILE261 4.3 25.3 1.0
C C:ASN262 4.4 28.9 1.0
CB C:ASP242 4.4 47.1 1.0
C C:ASP242 4.4 33.4 1.0
CB C:VAL244 4.5 22.3 1.0
N C:VAL244 4.6 23.1 1.0
O C:HOH836 4.7 30.4 1.0
O C:HOH887 4.7 32.3 1.0
N C:PHE243 4.8 35.5 1.0
CA C:ASN262 4.8 26.7 1.0
CA C:PHE243 4.9 26.9 1.0
CB C:SER260 5.0 22.7 1.0
O C:GLY263 5.0 36.0 1.0

Reference:

Y.Kim, G.Joachimiak, M.Endres, A.Joachimiak. Crystal Structure of Beta-Galactosidase From Bacteroides Cellulosilyticus To Be Published.
Page generated: Tue Jul 30 04:08:34 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy