Chlorine in PDB 7sf3: Sars-Cov-2 Main Protease (Mpro) in Complex with ML1006M

All present enzymatic activity of Sars-Cov-2 Main Protease (Mpro) in Complex with ML1006M:
3.4.22.69;

The structure of Sars-Cov-2 Main Protease (Mpro) in Complex with ML1006M, PDB code: 7sf3 was solved by M.Westberg, D.Fernandez, M.Z.Lin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.30 / 1.75
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	45.684, 64.44, 105.449, 90, 90, 90
R / Rfree (%)	16.9 / 19.5

The structure of Sars-Cov-2 Main Protease (Mpro) in Complex with ML1006M also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Chlorine atom in the Sars-Cov-2 Main Protease (Mpro) in Complex with ML1006M (pdb code 7sf3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Sars-Cov-2 Main Protease (Mpro) in Complex with ML1006M, PDB code: 7sf3:

Chlorine binding site 1 out of 1 in the Sars-Cov-2 Main Protease (Mpro) in Complex with ML1006M


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Sars-Cov-2 Main Protease (Mpro) in Complex with ML1006M within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl402 b:54.9 occ:0.50 N A:ALA285 3.6 26.9 1.0 OG A:SER284 3.7 37.4 1.0 N A:LEU286 4.2 25.4 1.0 CG A:LEU286 4.3 34.1 1.0 CB A:ALA285 4.3 30.7 1.0 CA A:SER284 4.3 27.9 1.0 CA A:ALA285 4.4 29.2 1.0 CD1 A:LEU286 4.4 38.1 1.0 CB A:SER284 4.5 29.7 1.0 C A:SER284 4.5 26.6 1.0 C A:ALA285 4.7 27.5 1.0 CB A:LEU286 4.7 27.9 1.0

M.Westberg, Y.Su, X.Zou, A.Rustagi, A.Beck, L.Ning, D.Fernandez, C.Blish, M.Z.Lin. Rational Design of A New Class of Protease Inhibitors For the Potential Treatment of Coronavirus Diseases To Be Published.