Chlorine in PDB 7tcd: LOV2-Darpin Fusion: D13

Protein crystallography data

The structure of LOV2-Darpin Fusion: D13, PDB code: 7tcd was solved by P.Mittl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.07 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 138.504, 47.902, 78.068, 90, 107.56, 90
R / Rfree (%) 18.1 / 25.2

Other elements in 7tcd:

The structure of LOV2-Darpin Fusion: D13 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the LOV2-Darpin Fusion: D13 (pdb code 7tcd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the LOV2-Darpin Fusion: D13, PDB code: 7tcd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7tcd

Go back to Chlorine Binding Sites List in 7tcd
Chlorine binding site 1 out of 2 in the LOV2-Darpin Fusion: D13


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of LOV2-Darpin Fusion: D13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl903

b:25.6
occ:1.00
O A:HOH1101 3.0 24.9 1.0
NZ A:LYS794 3.1 20.0 1.0
N A:ALA523 3.2 21.5 1.0
NE1 A:TRP795 3.3 22.2 1.0
CD2 A:LEU791 3.5 18.5 1.0
CE A:LYS794 3.6 20.8 1.0
CD A:LYS794 3.7 21.1 1.0
CA A:GLY522 3.8 22.4 1.0
CB A:ALA523 3.9 21.5 1.0
C A:GLY522 4.0 21.8 1.0
CE2 A:TRP795 4.0 22.5 1.0
CZ2 A:TRP795 4.1 24.9 1.0
CE A:MET786 4.2 23.9 1.0
CA A:ALA523 4.2 20.7 1.0
O A:HIS521 4.2 26.7 1.0
CD1 A:TRP795 4.4 21.4 1.0
O A:HOH1014 4.5 24.2 1.0
SD A:MET786 4.5 24.9 1.0
O A:HOH1177 4.5 33.2 1.0
N A:GLY522 4.6 22.8 1.0
C A:HIS521 4.7 24.7 1.0
OH A:TYR753 4.9 19.1 1.0
CE1 A:TYR761 4.9 25.8 1.0
CG A:LYS794 4.9 21.2 1.0
CD1 A:TYR761 5.0 25.3 1.0

Chlorine binding site 2 out of 2 in 7tcd

Go back to Chlorine Binding Sites List in 7tcd
Chlorine binding site 2 out of 2 in the LOV2-Darpin Fusion: D13


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of LOV2-Darpin Fusion: D13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl904

b:27.0
occ:1.00
O A:HOH1129 3.0 25.5 1.0
NH1 A:ARG617 3.3 20.8 1.0
NH1 A:ARG636 3.3 23.0 1.0
CD A:ARG617 3.8 22.4 1.0
CA A:ALA633 3.8 20.2 1.0
CD A:ARG636 3.9 20.3 1.0
CB A:ALA633 4.0 19.5 1.0
N A:ALA633 4.1 20.0 1.0
CD2 A:LEU614 4.1 22.5 1.0
CG A:GLU632 4.1 34.8 1.0
O A:HOH1007 4.2 37.0 1.0
CZ A:ARG636 4.3 21.3 1.0
CZ A:ARG617 4.3 21.0 1.0
O A:HOH1232 4.5 39.4 1.0
NE A:ARG617 4.5 21.3 1.0
NE A:ARG636 4.5 20.1 1.0
C A:GLU632 4.5 22.7 1.0
O A:GLU632 4.7 21.8 1.0
CD A:GLU632 4.8 42.0 1.0
CG A:ARG617 4.8 21.5 1.0
CG A:ARG636 4.9 20.6 1.0
OE1 A:GLU632 4.9 45.6 1.0
CB A:GLU632 5.0 28.5 1.0

Reference:

P.Mittl, A.Plueckthun. LOV2-Darpin Fusion: D13 To Be Published.
Page generated: Wed Jul 26 15:06:13 2023

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