Chlorine in PDB 7ugl: Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30
Enzymatic activity of Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30
All present enzymatic activity of Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30:
2.3.1.48;
Protein crystallography data
The structure of Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30, PDB code: 7ugl
was solved by
E.Schonbrunn,
M.Bikowitz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.54 /
1.50
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.08,
59.49,
57.47,
90,
109.76,
90
|
R / Rfree (%)
|
16 /
18.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30
(pdb code 7ugl). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30, PDB code: 7ugl:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7ugl
Go back to
Chlorine Binding Sites List in 7ugl
Chlorine binding site 1 out
of 4 in the Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1201
b:19.6
occ:1.00
|
CL16
|
A:N6I1201
|
0.0
|
19.6
|
1.0
|
C15
|
A:N6I1201
|
1.7
|
14.8
|
1.0
|
C17
|
A:N6I1201
|
2.7
|
15.6
|
1.0
|
C14
|
A:N6I1201
|
2.7
|
14.2
|
1.0
|
H4
|
A:N6I1201
|
2.7
|
18.7
|
1.0
|
H3
|
A:N6I1201
|
2.8
|
17.1
|
1.0
|
CH2
|
A:TRP1151
|
3.7
|
14.1
|
1.0
|
O
|
A:HOH1407
|
3.8
|
27.5
|
1.0
|
CZ3
|
A:TRP1151
|
3.9
|
12.8
|
1.0
|
CG
|
A:MET1193
|
3.9
|
16.1
|
1.0
|
CB
|
A:MET1193
|
3.9
|
14.9
|
1.0
|
C11
|
A:N6I1201
|
4.0
|
13.5
|
1.0
|
C13
|
A:N6I1201
|
4.0
|
14.1
|
1.0
|
CA
|
A:ASP1190
|
4.0
|
17.5
|
1.0
|
O
|
B:HOH1322
|
4.1
|
20.4
|
1.0
|
CE
|
B:LYS1139
|
4.2
|
18.3
|
1.0
|
CG2
|
A:ILE1189
|
4.3
|
14.8
|
1.0
|
O
|
A:ILE1189
|
4.4
|
14.7
|
1.0
|
N
|
A:ASP1190
|
4.5
|
14.9
|
1.0
|
C12
|
A:N6I1201
|
4.5
|
13.7
|
1.0
|
C
|
A:ILE1189
|
4.5
|
15.3
|
1.0
|
CB
|
A:ASP1190
|
4.6
|
22.5
|
1.0
|
H2
|
A:N6I1201
|
4.7
|
16.9
|
1.0
|
O
|
A:ASP1190
|
4.7
|
15.9
|
1.0
|
CZ2
|
A:TRP1151
|
4.8
|
13.1
|
1.0
|
CG1
|
A:ILE1189
|
4.8
|
12.6
|
1.0
|
OD2
|
A:ASP1190
|
4.9
|
33.2
|
1.0
|
CG
|
A:ASP1190
|
4.9
|
27.1
|
1.0
|
NZ
|
B:LYS1139
|
4.9
|
20.8
|
1.0
|
C
|
A:ASP1190
|
4.9
|
15.8
|
1.0
|
CD
|
B:LYS1139
|
5.0
|
15.9
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7ugl
Go back to
Chlorine Binding Sites List in 7ugl
Chlorine binding site 2 out
of 4 in the Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1202
b:53.7
occ:1.00
|
CL
|
A:2LO1202
|
0.0
|
53.7
|
1.0
|
C16
|
A:2LO1202
|
1.8
|
37.7
|
1.0
|
C17
|
A:2LO1202
|
2.7
|
36.0
|
1.0
|
C15
|
A:2LO1202
|
2.7
|
35.0
|
1.0
|
H6
|
A:2LO1202
|
2.8
|
43.2
|
1.0
|
O
|
A:2LO1202
|
3.0
|
41.1
|
1.0
|
CD
|
A:ARG1173
|
3.2
|
26.1
|
1.0
|
CG
|
A:PRO1110
|
3.3
|
21.3
|
1.0
|
CG
|
A:ARG1173
|
3.3
|
18.5
|
1.0
|
CE2
|
A:PHE1177
|
3.4
|
17.8
|
1.0
|
CD2
|
A:PHE1177
|
3.5
|
16.0
|
1.0
|
CG2
|
A:VAL1174
|
3.6
|
22.4
|
1.0
|
C12
|
A:2LO1202
|
4.0
|
37.2
|
1.0
|
C14
|
A:2LO1202
|
4.0
|
45.5
|
1.0
|
CB
|
A:ARG1173
|
4.1
|
18.4
|
1.0
|
CZ
|
A:PHE1177
|
4.3
|
17.8
|
1.0
|
CD
|
A:PRO1110
|
4.3
|
16.2
|
1.0
|
N
|
A:VAL1174
|
4.3
|
14.7
|
1.0
|
CB
|
A:PRO1110
|
4.3
|
17.5
|
1.0
|
CA
|
A:VAL1174
|
4.4
|
14.8
|
1.0
|
H25
|
A:2LO1202
|
4.4
|
35.4
|
1.0
|
C18
|
A:2LO1202
|
4.4
|
42.5
|
1.0
|
CG
|
A:PHE1177
|
4.5
|
14.6
|
1.0
|
C
|
A:ARG1173
|
4.5
|
15.2
|
1.0
|
C13
|
A:2LO1202
|
4.5
|
37.2
|
1.0
|
NE
|
A:ARG1173
|
4.6
|
35.4
|
1.0
|
CB
|
A:VAL1174
|
4.7
|
16.8
|
1.0
|
O
|
A:ARG1173
|
4.7
|
14.3
|
1.0
|
H4
|
A:2LO1202
|
4.8
|
54.7
|
1.0
|
H2
|
A:2LO1202
|
4.8
|
51.0
|
1.0
|
H1
|
A:2LO1202
|
4.8
|
51.0
|
1.0
|
H3
|
A:2LO1202
|
4.9
|
51.0
|
1.0
|
NH1
|
A:ARG1173
|
5.0
|
38.7
|
1.0
|
CA
|
A:ARG1173
|
5.0
|
17.0
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7ugl
Go back to
Chlorine Binding Sites List in 7ugl
Chlorine binding site 3 out
of 4 in the Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1201
b:21.3
occ:1.00
|
CL16
|
B:N6I1201
|
0.0
|
21.3
|
1.0
|
C15
|
B:N6I1201
|
1.8
|
14.6
|
1.0
|
C17
|
B:N6I1201
|
2.7
|
16.5
|
1.0
|
C14
|
B:N6I1201
|
2.7
|
16.1
|
1.0
|
H4
|
B:N6I1201
|
2.8
|
19.8
|
1.0
|
H3
|
B:N6I1201
|
2.8
|
19.3
|
1.0
|
O
|
B:HOH1371
|
3.7
|
28.8
|
1.0
|
CH2
|
B:TRP1151
|
3.7
|
14.5
|
1.0
|
O
|
B:HOH1336
|
3.8
|
25.4
|
1.0
|
CG
|
B:MET1193
|
3.9
|
19.3
|
1.0
|
CB
|
B:MET1193
|
4.0
|
14.3
|
1.0
|
C11
|
B:N6I1201
|
4.0
|
13.0
|
1.0
|
C13
|
B:N6I1201
|
4.0
|
13.8
|
1.0
|
CA
|
B:ASP1190
|
4.0
|
18.9
|
1.0
|
CZ3
|
B:TRP1151
|
4.0
|
13.3
|
1.0
|
CG2
|
B:ILE1189
|
4.2
|
16.2
|
1.0
|
O
|
B:ILE1189
|
4.4
|
14.7
|
1.0
|
N
|
B:ASP1190
|
4.5
|
15.3
|
1.0
|
C12
|
B:N6I1201
|
4.5
|
14.3
|
1.0
|
C
|
B:ILE1189
|
4.5
|
16.2
|
1.0
|
CB
|
B:ASP1190
|
4.7
|
20.2
|
1.0
|
H2
|
B:N6I1201
|
4.7
|
16.6
|
1.0
|
O
|
B:ASP1190
|
4.8
|
17.0
|
1.0
|
OD2
|
B:ASP1190
|
4.8
|
28.0
|
1.0
|
CZ2
|
B:TRP1151
|
4.9
|
14.1
|
1.0
|
CG1
|
B:ILE1189
|
4.9
|
16.2
|
1.0
|
C
|
B:ASP1190
|
5.0
|
18.4
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7ugl
Go back to
Chlorine Binding Sites List in 7ugl
Chlorine binding site 4 out
of 4 in the Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Bromodomain of Cbp Liganded with Bms-536924 and Sgc-CBP30 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1202
b:48.0
occ:0.00
|
CL
|
B:2LO1202
|
0.0
|
48.0
|
0.0
|
C16
|
B:2LO1202
|
1.8
|
50.0
|
0.0
|
C17
|
B:2LO1202
|
2.7
|
53.1
|
0.0
|
C15
|
B:2LO1202
|
2.8
|
52.9
|
0.0
|
CE2
|
B:PHE1177
|
3.0
|
19.0
|
1.0
|
O
|
B:2LO1202
|
3.2
|
48.7
|
0.0
|
CD2
|
B:PHE1177
|
3.3
|
18.6
|
1.0
|
CG2
|
B:VAL1174
|
3.5
|
19.1
|
1.0
|
CG
|
B:PRO1110
|
3.6
|
22.0
|
1.0
|
NE
|
B:ARG1173
|
3.7
|
32.1
|
1.0
|
CZ
|
B:PHE1177
|
4.0
|
18.4
|
1.0
|
C12
|
B:2LO1202
|
4.0
|
56.5
|
0.0
|
C14
|
B:2LO1202
|
4.1
|
58.1
|
0.0
|
CG
|
B:ARG1173
|
4.1
|
22.2
|
1.0
|
CD
|
B:ARG1173
|
4.1
|
29.9
|
1.0
|
CG
|
B:PHE1177
|
4.4
|
16.6
|
1.0
|
CA
|
B:VAL1174
|
4.4
|
14.5
|
1.0
|
N
|
B:VAL1174
|
4.5
|
14.7
|
1.0
|
CB
|
B:ARG1173
|
4.5
|
15.9
|
1.0
|
C13
|
B:2LO1202
|
4.5
|
57.5
|
0.0
|
CD
|
B:PRO1110
|
4.5
|
16.4
|
1.0
|
CB
|
B:VAL1174
|
4.6
|
17.6
|
1.0
|
C18
|
B:2LO1202
|
4.6
|
46.7
|
0.0
|
C
|
B:ARG1173
|
4.7
|
17.4
|
1.0
|
CB
|
B:PRO1110
|
4.7
|
19.9
|
1.0
|
CZ
|
B:ARG1173
|
4.8
|
29.1
|
1.0
|
O
|
B:ARG1173
|
4.8
|
14.9
|
1.0
|
CE1
|
B:PHE1177
|
4.9
|
21.8
|
1.0
|
NH2
|
B:ARG1173
|
4.9
|
33.5
|
1.0
|
|
Reference:
E.Schonbrunn,
M.Bikowitz.
Structural Basis of Cbp and EP300 Interaction with Kinase Inhibitors To Be Published.
Page generated: Tue Jul 30 05:04:25 2024
|