Chlorine in PDB 7v3o: The Structure of Se-Sobcmb with Fe(II)and Akg

Protein crystallography data

The structure of The Structure of Se-Sobcmb with Fe(II)and Akg, PDB code: 7v3o was solved by L.Wu, J.H.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.00 / 1.83
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.62, 101.62, 130.57, 90, 90, 120
R / Rfree (%) 20 / 22.7

Other elements in 7v3o:

The structure of The Structure of Se-Sobcmb with Fe(II)and Akg also contains other interesting chemical elements:

Iron (Fe) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of Se-Sobcmb with Fe(II)and Akg (pdb code 7v3o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Structure of Se-Sobcmb with Fe(II)and Akg, PDB code: 7v3o:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7v3o

Go back to Chlorine Binding Sites List in 7v3o
Chlorine binding site 1 out of 2 in the The Structure of Se-Sobcmb with Fe(II)and Akg


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of Se-Sobcmb with Fe(II)and Akg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:43.6
occ:0.50
O A:HOH530 3.2 29.9 1.0
O A:HOH503 3.4 38.9 1.0
NH1 A:ARG187 3.6 33.5 1.0
OE1 A:GLU119 3.8 27.5 1.0
CD A:ARG187 3.9 28.9 1.0
NH1 A:ARG97 4.0 48.9 1.0
OH A:TYR111 4.3 33.3 1.0
CD A:GLU119 4.5 27.3 1.0
CZ A:ARG187 4.6 29.3 1.0
OE2 A:GLU119 4.7 29.0 1.0
NE A:ARG187 4.8 28.5 1.0
NE2 A:HIS190 4.9 28.1 1.0

Chlorine binding site 2 out of 2 in 7v3o

Go back to Chlorine Binding Sites List in 7v3o
Chlorine binding site 2 out of 2 in the The Structure of Se-Sobcmb with Fe(II)and Akg


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of Se-Sobcmb with Fe(II)and Akg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:42.0
occ:1.00
O A:ASP116 2.8 29.8 1.0
ND1 A:HIS190 2.8 30.3 1.0
O A:VAL115 3.1 35.9 1.0
OD2 A:ASP192 3.2 40.6 0.8
O A:ARG114 3.4 34.1 1.0
NH2 A:ARG187 3.5 29.6 1.0
CE1 A:HIS190 3.6 30.0 1.0
C A:VAL115 3.6 42.3 1.0
C A:ASP116 3.6 28.5 1.0
CG A:HIS190 3.8 28.0 1.0
CB A:HIS190 4.1 31.0 1.0
N A:ASP116 4.2 32.5 1.0
CG A:ASP192 4.2 51.8 0.8
CA A:VAL115 4.3 36.0 1.0
CZ A:ARG187 4.3 29.3 1.0
CA A:ASP116 4.4 28.8 1.0
N A:GLN117 4.4 28.0 1.0
C A:ARG114 4.4 34.1 1.0
CA A:GLN117 4.5 32.1 1.0
O A:HOH512 4.8 42.9 1.0
NE2 A:HIS190 4.8 28.1 1.0
NE A:ARG187 4.8 28.5 1.0
N A:VAL115 4.8 36.4 1.0
OD1 A:ASP192 4.9 41.1 0.8
CD2 A:HIS190 4.9 28.3 1.0
C A:GLN117 5.0 33.1 1.0

Reference:

L.Wu, J.H.Zhou. The Apo Structure of Sobcmb with Fe(II) To Be Published.
Page generated: Tue Apr 4 22:03:59 2023

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