Chlorine in PDB 7v91: Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa

Enzymatic activity of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa

All present enzymatic activity of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa:
3.2.1.14;

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa, PDB code: 7v91 was solved by D.Kozome, T.Kubota, K.Ishikawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.09 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 90.9, 106.583, 107.656, 90, 90, 90
R / Rfree (%) 22.7 / 25.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa (pdb code 7v91). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa, PDB code: 7v91:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7v91

Go back to Chlorine Binding Sites List in 7v91
Chlorine binding site 1 out of 4 in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:46.5
occ:1.00
 O A:HOH462 3.5 33.1 1.0
NE A:ARG240 3.8 38.2 1.0
NH1 A:ARG187 3.8 23.5 1.0
NH2 A:ARG187 3.8 23.6 1.0
CZ A:ARG187 4.3 22.9 1.0
CB A:ALA185 4.4 27.6 1.0
CD A:ARG240 4.4 33.6 1.0
NH1 A:ARG240 4.7 42.4 1.0
CZ A:ARG240 4.7 41.0 1.0
CB A:ARG240 4.8 25.4 1.0

Chlorine binding site 2 out of 4 in 7v91

Go back to Chlorine Binding Sites List in 7v91
Chlorine binding site 2 out of 4 in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl307

b:54.4
occ:1.00
 NH2 B:ARG187 3.4 28.8 1.0
NH1 B:ARG187 3.4 29.4 1.0
O B:HOH482 3.5 42.3 1.0
NH1 B:ARG240 3.6 44.5 1.0
CZ B:ARG187 3.9 28.8 1.0
CD B:ARG240 4.1 37.3 1.0
CB B:ALA185 4.3 28.3 1.0
CZ B:ARG240 4.5 43.2 1.0
NE B:ARG240 4.7 41.1 1.0
O B:PRO241 4.8 25.2 1.0

Chlorine binding site 3 out of 4 in 7v91

Go back to Chlorine Binding Sites List in 7v91
Chlorine binding site 3 out of 4 in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl305

b:53.4
occ:1.00
 O C:HOH414 3.3 50.6 1.0
NH2 C:ARG187 3.4 36.3 1.0
NH1 C:ARG187 3.9 38.0 1.0
CZ C:ARG187 4.2 36.5 1.0
CB C:ALA185 4.4 32.7 1.0
NH2 C:ARG240 4.5 38.4 1.0
CD C:ARG240 4.8 35.8 1.0
O C:ALA181 4.8 34.6 1.0
CB C:ALA181 4.9 37.4 1.0

Chlorine binding site 4 out of 4 in 7v91

Go back to Chlorine Binding Sites List in 7v91
Chlorine binding site 4 out of 4 in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl305

b:51.9
occ:1.00
 NH2 D:ARG187 3.5 26.0 1.0
NH1 D:ARG187 3.7 25.8 1.0
NH1 D:ARG240 3.8 44.6 1.0
O D:HOH414 3.8 40.0 1.0
CZ D:ARG187 4.1 24.4 1.0
CD D:ARG240 4.3 33.6 1.0
CB D:ALA185 4.3 27.9 1.0
CZ D:ARG240 4.4 42.2 1.0
NE D:ARG240 4.6 37.7 1.0
CB D:ARG240 4.7 25.9 1.0
O D:PRO241 4.9 23.4 1.0

Reference:

D.Kozome, K.Uechi, T.Taira, H.Fukada, T.Kubota, K.Ishikawa. Structural Analysis and Construction of A Thermostable Antifungal Chitinase. Appl.Environ.Microbiol. V. 88 65222 2022.
ISSN: ESSN 1098-5336
PubMed: 35652665
DOI: 10.1128/AEM.00652-22
Page generated: Tue Apr 4 22:04:29 2023

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