Chlorine in PDB 7v91: Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa

Enzymatic activity of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa

All present enzymatic activity of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa:
3.2.1.14;

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa, PDB code: 7v91 was solved by D.Kozome, T.Kubota, K.Ishikawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.09 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 90.9, 106.583, 107.656, 90, 90, 90
R / Rfree (%) 22.7 / 25.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa (pdb code 7v91). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa, PDB code: 7v91:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7v91

Go back to Chlorine Binding Sites List in 7v91
Chlorine binding site 1 out of 4 in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:46.5
occ:1.00
 O A:HOH462 3.5 33.1 1.0
NE A:ARG240 3.8 38.2 1.0
NH1 A:ARG187 3.8 23.5 1.0
NH2 A:ARG187 3.8 23.6 1.0
CZ A:ARG187 4.3 22.9 1.0
CB A:ALA185 4.4 27.6 1.0
CD A:ARG240 4.4 33.6 1.0
NH1 A:ARG240 4.7 42.4 1.0
CZ A:ARG240 4.7 41.0 1.0
CB A:ARG240 4.8 25.4 1.0

Chlorine binding site 2 out of 4 in 7v91

Go back to Chlorine Binding Sites List in 7v91
Chlorine binding site 2 out of 4 in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl307

b:54.4
occ:1.00
 NH2 B:ARG187 3.4 28.8 1.0
NH1 B:ARG187 3.4 29.4 1.0
O B:HOH482 3.5 42.3 1.0
NH1 B:ARG240 3.6 44.5 1.0
CZ B:ARG187 3.9 28.8 1.0
CD B:ARG240 4.1 37.3 1.0
CB B:ALA185 4.3 28.3 1.0
CZ B:ARG240 4.5 43.2 1.0
NE B:ARG240 4.7 41.1 1.0
O B:PRO241 4.8 25.2 1.0

Chlorine binding site 3 out of 4 in 7v91

Go back to Chlorine Binding Sites List in 7v91
Chlorine binding site 3 out of 4 in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl305

b:53.4
occ:1.00
 O C:HOH414 3.3 50.6 1.0
NH2 C:ARG187 3.4 36.3 1.0
NH1 C:ARG187 3.9 38.0 1.0
CZ C:ARG187 4.2 36.5 1.0
CB C:ALA185 4.4 32.7 1.0
NH2 C:ARG240 4.5 38.4 1.0
CD C:ARG240 4.8 35.8 1.0
O C:ALA181 4.8 34.6 1.0
CB C:ALA181 4.9 37.4 1.0

Chlorine binding site 4 out of 4 in 7v91

Go back to Chlorine Binding Sites List in 7v91
Chlorine binding site 4 out of 4 in the Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Catalytic Domain of A Family GH19 Chitinase From Gazyumaru, Ficus Microcarpa within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl305

b:51.9
occ:1.00
 NH2 D:ARG187 3.5 26.0 1.0
NH1 D:ARG187 3.7 25.8 1.0
NH1 D:ARG240 3.8 44.6 1.0
O D:HOH414 3.8 40.0 1.0
CZ D:ARG187 4.1 24.4 1.0
CD D:ARG240 4.3 33.6 1.0
CB D:ALA185 4.3 27.9 1.0
CZ D:ARG240 4.4 42.2 1.0
NE D:ARG240 4.6 37.7 1.0
CB D:ARG240 4.7 25.9 1.0
O D:PRO241 4.9 23.4 1.0

Reference:

D.Kozome, K.Uechi, T.Taira, H.Fukada, T.Kubota, K.Ishikawa. Structural Analysis and Construction of A Thermostable Antifungal Chitinase. Appl.Environ.Microbiol. V. 88 65222 2022.
ISSN: ESSN 1098-5336
PubMed: 35652665
DOI: 10.1128/AEM.00652-22
Page generated: Tue Jul 30 05:19:20 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy