Chlorine in PDB 7vr9: Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid
Protein crystallography data
The structure of Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid, PDB code: 7vr9
was solved by
A.Kawai,
K.Yamasaki,
M.Otagiri,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.69 /
2.30
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
38.825,
94.039,
94.868,
105.29,
89.85,
100.2
|
R / Rfree (%)
|
21.9 /
26.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid
(pdb code 7vr9). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid, PDB code: 7vr9:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7vr9
Go back to
Chlorine Binding Sites List in 7vr9
Chlorine binding site 1 out
of 4 in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl607
b:91.1
occ:0.81
|
CL1
|
A:9SC607
|
0.0
|
91.1
|
0.8
|
C1
|
A:9SC607
|
1.7
|
89.3
|
0.8
|
C6
|
A:9SC607
|
2.7
|
88.2
|
0.8
|
C2
|
A:9SC607
|
2.7
|
89.9
|
0.8
|
CB
|
A:PHE157
|
3.1
|
60.1
|
1.0
|
CG
|
A:PHE157
|
3.1
|
63.9
|
1.0
|
CL2
|
A:9SC607
|
3.1
|
91.5
|
0.8
|
CD2
|
A:PHE157
|
3.5
|
63.9
|
1.0
|
CD1
|
A:PHE157
|
3.7
|
67.3
|
1.0
|
C5
|
A:9SC607
|
4.0
|
87.8
|
0.8
|
C3
|
A:9SC607
|
4.0
|
88.8
|
0.8
|
CD1
|
A:LEU154
|
4.1
|
58.0
|
1.0
|
CA
|
A:GLY189
|
4.2
|
58.6
|
1.0
|
CE2
|
A:PHE157
|
4.2
|
66.0
|
1.0
|
CE1
|
A:PHE157
|
4.4
|
70.1
|
1.0
|
C4
|
A:9SC607
|
4.5
|
88.2
|
0.8
|
CE2
|
A:TYR161
|
4.5
|
52.1
|
1.0
|
CA
|
A:PHE157
|
4.6
|
57.9
|
1.0
|
CZ
|
A:PHE157
|
4.7
|
69.1
|
1.0
|
CE2
|
A:PHE149
|
4.9
|
60.2
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7vr9
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Chlorine Binding Sites List in 7vr9
Chlorine binding site 2 out
of 4 in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl607
b:91.5
occ:0.81
|
CL2
|
A:9SC607
|
0.0
|
91.5
|
0.8
|
C2
|
A:9SC607
|
1.7
|
89.9
|
0.8
|
C7
|
A:9SC607
|
2.5
|
88.1
|
0.8
|
C1
|
A:9SC607
|
2.7
|
89.3
|
0.8
|
C3
|
A:9SC607
|
2.7
|
88.8
|
0.8
|
OH
|
A:TYR161
|
2.9
|
54.1
|
1.0
|
N1
|
A:9SC607
|
3.0
|
88.6
|
0.8
|
CL1
|
A:9SC607
|
3.1
|
91.1
|
0.8
|
CE2
|
A:TYR161
|
3.5
|
52.1
|
1.0
|
CZ
|
A:TYR161
|
3.6
|
52.9
|
1.0
|
C8
|
A:9SC607
|
3.7
|
88.7
|
0.8
|
C6
|
A:9SC607
|
4.0
|
88.2
|
0.8
|
C4
|
A:9SC607
|
4.0
|
88.2
|
0.8
|
O
|
A:LEU185
|
4.3
|
60.9
|
1.0
|
C10
|
A:9SC607
|
4.4
|
89.5
|
0.8
|
C5
|
A:9SC607
|
4.5
|
87.8
|
0.8
|
CA
|
A:ARG186
|
4.7
|
63.8
|
1.0
|
CA
|
A:GLY189
|
4.7
|
58.6
|
1.0
|
CD2
|
A:TYR161
|
4.8
|
52.3
|
1.0
|
C
|
A:LEU185
|
4.8
|
61.0
|
1.0
|
CG2
|
A:ILE142
|
4.9
|
52.4
|
1.0
|
CG1
|
A:ILE142
|
4.9
|
53.0
|
1.0
|
CD1
|
A:ILE142
|
4.9
|
57.8
|
1.0
|
N2
|
A:9SC607
|
4.9
|
89.8
|
0.8
|
CE1
|
A:TYR161
|
5.0
|
54.1
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7vr9
Go back to
Chlorine Binding Sites List in 7vr9
Chlorine binding site 3 out
of 4 in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl607
b:90.2
occ:0.81
|
CL1
|
B:9SC607
|
0.0
|
90.2
|
0.8
|
C1
|
B:9SC607
|
1.7
|
89.9
|
0.8
|
C6
|
B:9SC607
|
2.7
|
89.7
|
0.8
|
C2
|
B:9SC607
|
2.7
|
91.0
|
0.8
|
CL2
|
B:9SC607
|
3.1
|
91.8
|
0.8
|
CB
|
B:PHE157
|
3.4
|
54.9
|
1.0
|
CD1
|
B:LEU154
|
3.4
|
60.0
|
1.0
|
CG
|
B:PHE157
|
3.5
|
57.0
|
1.0
|
CD2
|
B:PHE157
|
3.8
|
57.8
|
1.0
|
C5
|
B:9SC607
|
4.0
|
89.9
|
0.8
|
C3
|
B:9SC607
|
4.0
|
90.8
|
0.8
|
CD1
|
B:PHE157
|
4.2
|
58.5
|
1.0
|
CG2
|
B:ILE142
|
4.4
|
44.2
|
1.0
|
CA
|
B:GLY189
|
4.4
|
58.0
|
1.0
|
C4
|
B:9SC607
|
4.5
|
90.6
|
0.8
|
CE2
|
B:PHE157
|
4.6
|
59.0
|
1.0
|
CE2
|
B:PHE149
|
4.8
|
56.3
|
1.0
|
CA
|
B:LEU154
|
4.8
|
50.2
|
1.0
|
CG
|
B:LEU154
|
4.8
|
57.3
|
1.0
|
CA
|
B:PHE157
|
4.9
|
54.3
|
1.0
|
CZ
|
B:PHE149
|
4.9
|
59.2
|
1.0
|
CE1
|
B:PHE157
|
4.9
|
60.5
|
1.0
|
O
|
B:LEU154
|
5.0
|
53.0
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7vr9
Go back to
Chlorine Binding Sites List in 7vr9
Chlorine binding site 4 out
of 4 in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl607
b:91.8
occ:0.81
|
CL2
|
B:9SC607
|
0.0
|
91.8
|
0.8
|
C2
|
B:9SC607
|
1.7
|
91.0
|
0.8
|
C7
|
B:9SC607
|
2.4
|
89.2
|
0.8
|
C1
|
B:9SC607
|
2.7
|
89.9
|
0.8
|
C3
|
B:9SC607
|
2.7
|
90.8
|
0.8
|
C8
|
B:9SC607
|
2.7
|
88.0
|
0.8
|
N1
|
B:9SC607
|
3.0
|
90.4
|
0.8
|
CL1
|
B:9SC607
|
3.1
|
90.2
|
0.8
|
OH
|
B:TYR161
|
3.2
|
55.2
|
1.0
|
CE2
|
B:TYR161
|
3.8
|
52.8
|
1.0
|
CZ
|
B:TYR161
|
4.0
|
53.5
|
1.0
|
C6
|
B:9SC607
|
4.0
|
89.7
|
0.8
|
C4
|
B:9SC607
|
4.0
|
90.6
|
0.8
|
N2
|
B:9SC607
|
4.1
|
87.4
|
0.8
|
O
|
B:LEU185
|
4.1
|
59.2
|
1.0
|
C10
|
B:9SC607
|
4.2
|
90.2
|
0.8
|
CA
|
B:GLY189
|
4.3
|
58.0
|
1.0
|
C9
|
B:9SC607
|
4.3
|
88.7
|
0.8
|
C5
|
B:9SC607
|
4.5
|
89.9
|
0.8
|
CA
|
B:ARG186
|
4.5
|
61.8
|
1.0
|
C
|
B:LEU185
|
4.7
|
60.5
|
1.0
|
CG2
|
B:ILE142
|
4.8
|
44.2
|
1.0
|
N
|
B:ARG186
|
4.9
|
61.0
|
1.0
|
N
|
B:GLY189
|
5.0
|
62.4
|
1.0
|
O
|
B:ARG186
|
5.0
|
61.3
|
1.0
|
|
Reference:
K.Hirata,
A.Kawai,
V.T.G.Chuang,
K.Sakurama,
K.Nishi,
K.Yamasaki,
M.Otagiri.
Effects of Myristate on the Induced Circular Dichroism Spectra of Aripiprazole Bound to Human Serum Albumin: A Structural-Chemical Investigation Acs Omega V. 7 4413 2022.
ISSN: ESSN 2470-1343
DOI: 10.1021/ACSOMEGA.1C06220
Page generated: Tue Jul 30 05:27:38 2024
|