Chlorine in PDB 7vr9: Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid

Protein crystallography data

The structure of Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid, PDB code: 7vr9 was solved by A.Kawai, K.Yamasaki, M.Otagiri, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.69 / 2.30
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 38.825, 94.039, 94.868, 105.29, 89.85, 100.2
R / Rfree (%) 21.9 / 26.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid (pdb code 7vr9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid, PDB code: 7vr9:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7vr9

Go back to Chlorine Binding Sites List in 7vr9
Chlorine binding site 1 out of 4 in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl607

b:91.1
occ:0.81
CL1 A:9SC607 0.0 91.1 0.8
C1 A:9SC607 1.7 89.3 0.8
C6 A:9SC607 2.7 88.2 0.8
C2 A:9SC607 2.7 89.9 0.8
CB A:PHE157 3.1 60.1 1.0
CG A:PHE157 3.1 63.9 1.0
CL2 A:9SC607 3.1 91.5 0.8
CD2 A:PHE157 3.5 63.9 1.0
CD1 A:PHE157 3.7 67.3 1.0
C5 A:9SC607 4.0 87.8 0.8
C3 A:9SC607 4.0 88.8 0.8
CD1 A:LEU154 4.1 58.0 1.0
CA A:GLY189 4.2 58.6 1.0
CE2 A:PHE157 4.2 66.0 1.0
CE1 A:PHE157 4.4 70.1 1.0
C4 A:9SC607 4.5 88.2 0.8
CE2 A:TYR161 4.5 52.1 1.0
CA A:PHE157 4.6 57.9 1.0
CZ A:PHE157 4.7 69.1 1.0
CE2 A:PHE149 4.9 60.2 1.0

Chlorine binding site 2 out of 4 in 7vr9

Go back to Chlorine Binding Sites List in 7vr9
Chlorine binding site 2 out of 4 in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl607

b:91.5
occ:0.81
CL2 A:9SC607 0.0 91.5 0.8
C2 A:9SC607 1.7 89.9 0.8
C7 A:9SC607 2.5 88.1 0.8
C1 A:9SC607 2.7 89.3 0.8
C3 A:9SC607 2.7 88.8 0.8
OH A:TYR161 2.9 54.1 1.0
N1 A:9SC607 3.0 88.6 0.8
CL1 A:9SC607 3.1 91.1 0.8
CE2 A:TYR161 3.5 52.1 1.0
CZ A:TYR161 3.6 52.9 1.0
C8 A:9SC607 3.7 88.7 0.8
C6 A:9SC607 4.0 88.2 0.8
C4 A:9SC607 4.0 88.2 0.8
O A:LEU185 4.3 60.9 1.0
C10 A:9SC607 4.4 89.5 0.8
C5 A:9SC607 4.5 87.8 0.8
CA A:ARG186 4.7 63.8 1.0
CA A:GLY189 4.7 58.6 1.0
CD2 A:TYR161 4.8 52.3 1.0
C A:LEU185 4.8 61.0 1.0
CG2 A:ILE142 4.9 52.4 1.0
CG1 A:ILE142 4.9 53.0 1.0
CD1 A:ILE142 4.9 57.8 1.0
N2 A:9SC607 4.9 89.8 0.8
CE1 A:TYR161 5.0 54.1 1.0

Chlorine binding site 3 out of 4 in 7vr9

Go back to Chlorine Binding Sites List in 7vr9
Chlorine binding site 3 out of 4 in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl607

b:90.2
occ:0.81
CL1 B:9SC607 0.0 90.2 0.8
C1 B:9SC607 1.7 89.9 0.8
C6 B:9SC607 2.7 89.7 0.8
C2 B:9SC607 2.7 91.0 0.8
CL2 B:9SC607 3.1 91.8 0.8
CB B:PHE157 3.4 54.9 1.0
CD1 B:LEU154 3.4 60.0 1.0
CG B:PHE157 3.5 57.0 1.0
CD2 B:PHE157 3.8 57.8 1.0
C5 B:9SC607 4.0 89.9 0.8
C3 B:9SC607 4.0 90.8 0.8
CD1 B:PHE157 4.2 58.5 1.0
CG2 B:ILE142 4.4 44.2 1.0
CA B:GLY189 4.4 58.0 1.0
C4 B:9SC607 4.5 90.6 0.8
CE2 B:PHE157 4.6 59.0 1.0
CE2 B:PHE149 4.8 56.3 1.0
CA B:LEU154 4.8 50.2 1.0
CG B:LEU154 4.8 57.3 1.0
CA B:PHE157 4.9 54.3 1.0
CZ B:PHE149 4.9 59.2 1.0
CE1 B:PHE157 4.9 60.5 1.0
O B:LEU154 5.0 53.0 1.0

Chlorine binding site 4 out of 4 in 7vr9

Go back to Chlorine Binding Sites List in 7vr9
Chlorine binding site 4 out of 4 in the Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Human Serum Albumin Complex with Aripiprazole and Myristic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl607

b:91.8
occ:0.81
CL2 B:9SC607 0.0 91.8 0.8
C2 B:9SC607 1.7 91.0 0.8
C7 B:9SC607 2.4 89.2 0.8
C1 B:9SC607 2.7 89.9 0.8
C3 B:9SC607 2.7 90.8 0.8
C8 B:9SC607 2.7 88.0 0.8
N1 B:9SC607 3.0 90.4 0.8
CL1 B:9SC607 3.1 90.2 0.8
OH B:TYR161 3.2 55.2 1.0
CE2 B:TYR161 3.8 52.8 1.0
CZ B:TYR161 4.0 53.5 1.0
C6 B:9SC607 4.0 89.7 0.8
C4 B:9SC607 4.0 90.6 0.8
N2 B:9SC607 4.1 87.4 0.8
O B:LEU185 4.1 59.2 1.0
C10 B:9SC607 4.2 90.2 0.8
CA B:GLY189 4.3 58.0 1.0
C9 B:9SC607 4.3 88.7 0.8
C5 B:9SC607 4.5 89.9 0.8
CA B:ARG186 4.5 61.8 1.0
C B:LEU185 4.7 60.5 1.0
CG2 B:ILE142 4.8 44.2 1.0
N B:ARG186 4.9 61.0 1.0
N B:GLY189 5.0 62.4 1.0
O B:ARG186 5.0 61.3 1.0

Reference:

K.Hirata, A.Kawai, V.T.G.Chuang, K.Sakurama, K.Nishi, K.Yamasaki, M.Otagiri. Effects of Myristate on the Induced Circular Dichroism Spectra of Aripiprazole Bound to Human Serum Albumin: A Structural-Chemical Investigation Acs Omega V. 7 4413 2022.
ISSN: ESSN 2470-1343
DOI: 10.1021/ACSOMEGA.1C06220
Page generated: Tue Apr 4 22:07:05 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy