Chlorine in PDB 7w5v: A Nonheme Iron- and Alpha-Ketoglutarate- Dependent Halogenase That Catalyzes Nucleotide Substrates

The structure of A Nonheme Iron- and Alpha-Ketoglutarate- Dependent Halogenase That Catalyzes Nucleotide Substrates, PDB code: 7w5v was solved by L.H.Dai, X.Zhang, Y.M.Hu, J.W.Huang, C.C.Chen, R.T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.20 / 1.81
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	52.424, 72.397, 81.368, 90, 90, 90
R / Rfree (%)	16.7 / 21.5

The structure of A Nonheme Iron- and Alpha-Ketoglutarate- Dependent Halogenase That Catalyzes Nucleotide Substrates also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Chlorine atom in the A Nonheme Iron- and Alpha-Ketoglutarate- Dependent Halogenase That Catalyzes Nucleotide Substrates (pdb code 7w5v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the A Nonheme Iron- and Alpha-Ketoglutarate- Dependent Halogenase That Catalyzes Nucleotide Substrates, PDB code: 7w5v:

Chlorine binding site 1 out of 1 in the A Nonheme Iron- and Alpha-Ketoglutarate- Dependent Halogenase That Catalyzes Nucleotide Substrates


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of A Nonheme Iron- and Alpha-Ketoglutarate- Dependent Halogenase That Catalyzes Nucleotide Substrates within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:34.6 occ:1.00 FE A:FE402 2.2 22.0 1.0 O A:HOH754 2.5 28.1 1.0 O A:HOH700 3.1 16.2 1.0 O A:HOH516 3.1 22.3 1.0 NE2 A:HIS194 3.1 17.9 1.0 O A:HOH702 3.2 6.8 1.0 NE2 A:HIS252 3.2 13.7 1.0 CD2 A:HIS194 3.3 20.0 1.0 CE1 A:HIS252 3.3 15.1 1.0 N A:GLY196 3.5 15.4 1.0 CA A:GLY196 3.8 13.3 1.0 CE1 A:PHE271 3.8 18.2 1.0 C A:SER195 4.0 15.5 1.0 CZ A:PHE271 4.4 18.8 1.0 CE1 A:HIS194 4.4 17.1 1.0 O A:SER195 4.4 17.1 1.0 O A:HOH520 4.5 20.9 1.0 CA A:SER195 4.5 14.4 1.0 O A:HOH641 4.6 15.6 1.0 CD2 A:HIS252 4.6 12.7 1.0 ND1 A:HIS252 4.6 12.9 1.0 CG A:HIS194 4.6 15.9 1.0 O A:HOH532 4.7 40.0 1.0 CD1 A:PHE271 4.8 17.9 1.0

L.Dai, X.Zhang, Y.Hu, J.Shen, Q.Zhang, L.Zhang, J.Min, C.C.Chen, Y.Liu, J.W.Huang, R.T.Guo. Structural and Functional Insights Into A Nonheme Iron- and Alpha-Ketoglutarate-Dependent Halogenase That Catalyzes Chlorination of Nucleotide Substrates. Appl.Environ.Microbiol. V. 88 49721 2022.
ISSN: ESSN 1098-5336
PubMed: 35435717
DOI: 10.1128/AEM.02497-21