Chlorine in PDB 7waj: Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co

Enzymatic activity of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co

All present enzymatic activity of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co:
6.1.1.17;

Protein crystallography data

The structure of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co, PDB code: 7waj was solved by V.Sharma, Y.Manickam, P.Babbar, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.04 / 2.25
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 158.19, 46.34, 95.32, 90, 110.72, 90
R / Rfree (%) 19.9 / 24.7

Other elements in 7waj:

The structure of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co also contains other interesting chemical elements:

Cobalt (Co) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co (pdb code 7waj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co, PDB code: 7waj:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7waj

Go back to Chlorine Binding Sites List in 7waj
Chlorine binding site 1 out of 4 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl911

b:80.7
occ:1.00
 OG A:SER538 3.2 77.8 1.0
N A:SER538 3.6 59.9 1.0
NZ A:LYS329 3.7 55.5 1.0
CA A:PHE537 4.1 57.7 1.0
CB A:PHE537 4.2 49.2 1.0
CB A:SER538 4.4 65.3 1.0
C A:PHE537 4.4 59.6 1.0
CE A:LYS329 4.5 49.7 1.0
CA A:SER538 4.6 62.4 1.0

Chlorine binding site 2 out of 4 in 7waj

Go back to Chlorine Binding Sites List in 7waj
Chlorine binding site 2 out of 4 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl912

b:93.9
occ:1.00
 NH1 A:ARG577 3.4 58.5 1.0
NH2 A:ARG577 3.4 80.8 1.0
CZ A:ARG577 3.9 71.3 1.0
OG A:SER563 4.0 99.3 1.0
CB A:ASP562 4.6 106.9 1.0
OD2 A:ASP566 5.0 70.0 1.0

Chlorine binding site 3 out of 4 in 7waj

Go back to Chlorine Binding Sites List in 7waj
Chlorine binding site 3 out of 4 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl913

b:103.3
occ:1.00
 NH2 A:ARG471 3.7 82.1 1.0
NH1 A:ARG416 4.0 108.2 1.0
NH2 A:ARG416 4.1 104.2 1.0
CZ A:ARG416 4.4 107.5 1.0
CG2 A:VAL468 4.6 63.4 1.0
CZ A:ARG471 4.9 77.8 1.0

Chlorine binding site 4 out of 4 in 7waj

Go back to Chlorine Binding Sites List in 7waj
Chlorine binding site 4 out of 4 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) Complexed with Atp and Co within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl914

b:112.0
occ:1.00
 O A:ASN559 3.6 92.5 1.0
C A:ASN559 4.8 95.4 1.0
CB A:ASN559 4.9 97.7 1.0

Reference:

V.K.Sharma, J.Chhibber-Goel, M.Yogavel, A.Sharma. Structural Characterization of Glutamyl-Trna Synthetase (Glurs) From Plasmodium Falciparum. Mol.Biochem.Parasitol. V. 253 11530 2022.
ISSN: ISSN 0166-6851
PubMed: 36370911
DOI: 10.1016/J.MOLBIOPARA.2022.111530
Page generated: Tue Apr 4 22:11:14 2023

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