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Chlorine in PDB 7wao: Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn

Enzymatic activity of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn

All present enzymatic activity of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn:
6.1.1.17;

Protein crystallography data

The structure of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn, PDB code: 7wao was solved by V.Sharma, Y.Manickam, P.Babbar, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.33 / 2.58
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 156.75, 46.88, 94.53, 90, 108.88, 90
R / Rfree (%) 18.6 / 24.6

Other elements in 7wao:

The structure of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn also contains other interesting chemical elements:

Manganese (Mn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn (pdb code 7wao). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn, PDB code: 7wao:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7wao

Go back to Chlorine Binding Sites List in 7wao
Chlorine binding site 1 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1005

b:85.5
occ:1.00
 NH2 A:ARG577 3.4 80.1 1.0
NH1 A:ARG577 3.7 90.9 1.0
CZ A:ARG577 4.0 76.7 1.0
OG A:SER563 4.1 78.8 1.0
CB A:ASP562 4.2 113.0 1.0
OD2 A:ASP566 4.8 82.7 1.0
CA A:ASP566 4.8 64.6 1.0
N A:SER563 4.9 83.8 1.0
OD2 A:ASP562 4.9 134.2 1.0
NZ A:LYS766 4.9 79.9 1.0

Chlorine binding site 2 out of 5 in 7wao

Go back to Chlorine Binding Sites List in 7wao
Chlorine binding site 2 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1006

b:91.4
occ:1.00
 N A:SER538 3.1 72.4 1.0
OG A:SER538 3.3 83.4 1.0
NZ A:LYS329 3.4 76.0 1.0
CB A:PHE537 3.6 59.7 1.0
CA A:PHE537 3.6 68.2 1.0
C A:PHE537 3.9 70.6 1.0
CB A:SER538 3.9 73.3 1.0
CA A:PRO594 4.1 76.5 1.0
CA A:SER538 4.1 70.6 1.0
CB A:PRO594 4.3 71.7 1.0
N A:PRO594 4.6 86.5 1.0
CE A:LYS329 4.7 54.0 1.0
O A:SER538 4.8 76.8 1.0
CG A:PHE537 4.9 58.9 1.0
C A:GLY593 4.9 89.2 1.0
O A:GLY593 4.9 84.3 1.0
N A:PHE537 5.0 67.6 1.0

Chlorine binding site 3 out of 5 in 7wao

Go back to Chlorine Binding Sites List in 7wao
Chlorine binding site 3 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1007

b:112.4
occ:1.00
 NH2 A:ARG790 3.5 86.7 1.0
NE A:ARG790 4.2 71.8 1.0
CZ A:ARG790 4.3 78.2 1.0

Chlorine binding site 4 out of 5 in 7wao

Go back to Chlorine Binding Sites List in 7wao
Chlorine binding site 4 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1008

b:109.2
occ:1.00
 NH1 A:ARG416 4.1 72.5 1.0
NH2 A:ARG471 4.1 83.9 1.0
NH1 A:ARG471 4.4 66.7 1.0
CG2 A:VAL468 4.5 62.4 1.0
CZ A:ARG471 4.8 78.2 1.0

Chlorine binding site 5 out of 5 in 7wao

Go back to Chlorine Binding Sites List in 7wao
Chlorine binding site 5 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Mn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1009

b:98.8
occ:1.00
 N A:ARG550 3.3 92.4 1.0
OG A:SER548 3.5 96.7 1.0
CB A:ARG550 3.8 88.3 1.0
N A:LYS549 3.8 103.9 1.0
CB A:LYS549 4.0 78.4 1.0
CA A:ARG550 4.1 91.0 1.0
C A:LYS549 4.2 93.8 1.0
CA A:LYS549 4.2 91.1 1.0
C A:SER548 4.3 103.0 1.0
CB A:SER548 4.4 95.1 1.0
CA A:SER548 4.6 90.6 1.0
O A:SER548 4.9 106.8 1.0

Reference:

V.K.Sharma, J.Chhibber-Goel, M.Yogavel, A.Sharma. Structural Characterization of Glutamyl-Trna Synthetase (Glurs) From Plasmodium Falciparum. Mol.Biochem.Parasitol. V. 253 11530 2022.
ISSN: ISSN 0166-6851
PubMed: 36370911
DOI: 10.1016/J.MOLBIOPARA.2022.111530
Page generated: Tue Jul 30 05:35:38 2024

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