Chlorine in PDB 7wbf: Crystal Structure of Lysozyme
Enzymatic activity of Crystal Structure of Lysozyme
All present enzymatic activity of Crystal Structure of Lysozyme:
3.2.1.17;
Protein crystallography data
The structure of Crystal Structure of Lysozyme, PDB code: 7wbf
was solved by
K.H.Nam,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.57 /
1.60
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.135,
79.135,
37.018,
90,
90,
90
|
R / Rfree (%)
|
17.2 /
21
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Lysozyme
(pdb code 7wbf). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Crystal Structure of Lysozyme, PDB code: 7wbf:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 7wbf
Go back to
Chlorine Binding Sites List in 7wbf
Chlorine binding site 1 out
of 2 in the Crystal Structure of Lysozyme
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Lysozyme within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl201
b:12.7
occ:1.00
|
HD22
|
A:ASN131
|
2.5
|
15.5
|
1.0
|
HA
|
A:ALA128
|
2.9
|
14.5
|
1.0
|
HB2
|
A:ASN131
|
2.9
|
11.4
|
1.0
|
HG12
|
A:VAL127
|
3.2
|
27.9
|
1.0
|
ND2
|
A:ASN131
|
3.3
|
12.9
|
1.0
|
HD2
|
A:ARG132
|
3.6
|
15.9
|
1.0
|
CB
|
A:ASN131
|
3.7
|
9.5
|
1.0
|
HB2
|
A:ALA128
|
3.7
|
17.8
|
1.0
|
HB3
|
A:ASN131
|
3.8
|
11.4
|
1.0
|
CA
|
A:ALA128
|
3.8
|
12.0
|
1.0
|
HG3
|
A:ARG132
|
3.9
|
17.0
|
1.0
|
HD21
|
A:ASN131
|
3.9
|
15.5
|
1.0
|
CG
|
A:ASN131
|
4.0
|
11.1
|
1.0
|
CG1
|
A:VAL127
|
4.1
|
23.2
|
1.0
|
CB
|
A:ALA128
|
4.2
|
14.8
|
1.0
|
N
|
A:ALA128
|
4.3
|
11.0
|
1.0
|
O
|
A:VAL127
|
4.3
|
11.7
|
1.0
|
CD
|
A:ARG132
|
4.4
|
13.2
|
1.0
|
HG11
|
A:VAL127
|
4.4
|
27.9
|
1.0
|
HG13
|
A:VAL127
|
4.4
|
27.9
|
1.0
|
C
|
A:VAL127
|
4.4
|
9.9
|
1.0
|
HB1
|
A:ALA128
|
4.5
|
17.8
|
1.0
|
HD3
|
A:ARG132
|
4.5
|
15.9
|
1.0
|
CG
|
A:ARG132
|
4.6
|
14.1
|
1.0
|
H
|
A:ALA128
|
4.7
|
13.2
|
1.0
|
HH11
|
A:ARG132
|
4.8
|
13.9
|
1.0
|
H
|
A:ASN131
|
4.8
|
11.9
|
1.0
|
HG2
|
A:ARG132
|
4.9
|
17.0
|
1.0
|
O
|
A:HOH404
|
4.9
|
26.9
|
1.0
|
C
|
A:ALA128
|
4.9
|
11.2
|
1.0
|
O
|
A:ALA128
|
5.0
|
11.6
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 7wbf
Go back to
Chlorine Binding Sites List in 7wbf
Chlorine binding site 2 out
of 2 in the Crystal Structure of Lysozyme
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Lysozyme within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:17.4
occ:1.00
|
H
|
A:GLY44
|
2.4
|
13.5
|
1.0
|
HG
|
A:SER42
|
2.5
|
18.4
|
1.0
|
HA
|
A:GLN139
|
2.8
|
19.7
|
1.0
|
HB2
|
A:SER42
|
2.8
|
18.7
|
1.0
|
HA3
|
A:GLY44
|
2.9
|
12.6
|
1.0
|
HD11
|
A:ILE142
|
3.0
|
29.5
|
1.0
|
O
|
A:HOH384
|
3.0
|
30.1
|
1.0
|
OG
|
A:SER42
|
3.1
|
15.3
|
1.0
|
N
|
A:GLY44
|
3.1
|
11.2
|
1.0
|
CB
|
A:SER42
|
3.4
|
15.6
|
1.0
|
CA
|
A:GLY44
|
3.5
|
10.5
|
1.0
|
HG12
|
A:ILE142
|
3.6
|
22.7
|
1.0
|
HB2
|
A:GLN139
|
3.6
|
23.6
|
1.0
|
CA
|
A:GLN139
|
3.6
|
16.4
|
1.0
|
HG23
|
A:VAL138
|
3.8
|
20.3
|
1.0
|
CD1
|
A:ILE142
|
3.9
|
24.5
|
1.0
|
HG2
|
A:GLN139
|
4.0
|
29.5
|
1.0
|
N
|
A:GLN139
|
4.0
|
15.9
|
1.0
|
HB3
|
A:SER42
|
4.0
|
18.7
|
1.0
|
H
|
A:LEU43
|
4.0
|
15.0
|
1.0
|
CB
|
A:GLN139
|
4.0
|
19.6
|
1.0
|
HG21
|
A:VAL138
|
4.1
|
20.3
|
1.0
|
N
|
A:LEU43
|
4.1
|
12.4
|
1.0
|
HA2
|
A:GLY44
|
4.1
|
12.6
|
1.0
|
H
|
A:ASN45
|
4.2
|
11.6
|
1.0
|
CG1
|
A:ILE142
|
4.2
|
18.9
|
1.0
|
HD12
|
A:ILE142
|
4.2
|
29.5
|
1.0
|
HB3
|
A:LEU43
|
4.3
|
15.1
|
1.0
|
C
|
A:SER42
|
4.3
|
11.2
|
1.0
|
H
|
A:GLN139
|
4.3
|
19.2
|
1.0
|
C
|
A:LEU43
|
4.3
|
11.8
|
1.0
|
O
|
A:VAL138
|
4.4
|
13.6
|
1.0
|
C
|
A:VAL138
|
4.4
|
14.7
|
1.0
|
CG2
|
A:VAL138
|
4.4
|
16.9
|
1.0
|
CG
|
A:GLN139
|
4.5
|
24.5
|
1.0
|
HD13
|
A:ILE142
|
4.5
|
29.5
|
1.0
|
CA
|
A:SER42
|
4.5
|
11.4
|
1.0
|
C
|
A:GLY44
|
4.5
|
7.9
|
1.0
|
N
|
A:ASN45
|
4.6
|
9.6
|
1.0
|
CA
|
A:LEU43
|
4.7
|
9.9
|
1.0
|
HG23
|
A:ILE142
|
4.7
|
18.6
|
1.0
|
O
|
A:SER42
|
4.7
|
12.4
|
1.0
|
HG13
|
A:ILE142
|
4.7
|
22.7
|
1.0
|
HB
|
A:VAL138
|
4.8
|
17.6
|
1.0
|
HG3
|
A:GLN139
|
4.8
|
29.5
|
1.0
|
C
|
A:GLN139
|
4.8
|
16.3
|
1.0
|
HB3
|
A:GLN139
|
4.9
|
23.6
|
1.0
|
CB
|
A:LEU43
|
5.0
|
12.6
|
1.0
|
HD21
|
A:ASN45
|
5.0
|
13.7
|
1.0
|
|
Reference:
K.H.Nam,
K.H.Nam.
N/A N/A.
Page generated: Tue Jul 30 05:36:18 2024
|