Chlorine in PDB 7wn7: Crystal Structure of Hearnpv P26
Protein crystallography data
The structure of Crystal Structure of Hearnpv P26, PDB code: 7wn7
was solved by
W.Kuang,
Z.Hu,
P.Gong,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
28.74 /
1.90
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
194.749,
69.236,
52.746,
90,
102.18,
90
|
R / Rfree (%)
|
18.4 /
21.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Hearnpv P26
(pdb code 7wn7). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Crystal Structure of Hearnpv P26, PDB code: 7wn7:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 7wn7
Go back to
Chlorine Binding Sites List in 7wn7
Chlorine binding site 1 out
of 3 in the Crystal Structure of Hearnpv P26
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Hearnpv P26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:30.7
occ:1.00
|
O
|
B:HOH528
|
3.0
|
27.1
|
1.0
|
O
|
A:HOH488
|
3.0
|
23.7
|
1.0
|
OG
|
A:SER175
|
3.1
|
23.8
|
1.0
|
N
|
A:GLY176
|
3.6
|
23.0
|
1.0
|
CA
|
A:GLY176
|
3.6
|
22.7
|
1.0
|
CD
|
B:ARG257
|
3.7
|
22.9
|
1.0
|
CD
|
B:ARG259
|
3.7
|
24.5
|
1.0
|
C
|
A:SER175
|
3.8
|
20.8
|
1.0
|
CB
|
A:SER175
|
3.8
|
19.4
|
1.0
|
C
|
A:GLY176
|
3.9
|
20.1
|
1.0
|
CG
|
B:ARG257
|
3.9
|
22.2
|
1.0
|
CG
|
B:ARG259
|
4.0
|
24.8
|
1.0
|
O
|
A:SER175
|
4.0
|
20.2
|
1.0
|
CG
|
A:GLN177
|
4.1
|
24.7
|
1.0
|
O
|
A:GLY176
|
4.2
|
20.7
|
1.0
|
NE2
|
A:GLN177
|
4.2
|
31.2
|
1.0
|
O
|
A:HOH545
|
4.3
|
44.3
|
1.0
|
N
|
A:GLN177
|
4.4
|
21.7
|
1.0
|
O
|
A:HOH515
|
4.5
|
32.6
|
1.0
|
CA
|
A:SER175
|
4.5
|
18.4
|
1.0
|
CD
|
A:GLN177
|
4.6
|
32.2
|
1.0
|
CB
|
B:ARG259
|
4.6
|
19.5
|
1.0
|
O
|
A:HOH458
|
4.7
|
36.6
|
1.0
|
O
|
A:HOH541
|
4.9
|
29.3
|
1.0
|
N
|
B:ARG259
|
5.0
|
19.0
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 7wn7
Go back to
Chlorine Binding Sites List in 7wn7
Chlorine binding site 2 out
of 3 in the Crystal Structure of Hearnpv P26
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Hearnpv P26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl302
b:41.7
occ:1.00
|
O
|
B:HOH540
|
2.6
|
36.6
|
1.0
|
O
|
B:LEU145
|
2.8
|
23.1
|
1.0
|
ND2
|
B:ASN25
|
2.9
|
28.0
|
1.0
|
N
|
B:LEU145
|
3.4
|
23.1
|
1.0
|
CB
|
B:LEU145
|
3.7
|
23.7
|
1.0
|
C
|
B:LEU145
|
3.7
|
25.5
|
1.0
|
O
|
B:HOH459
|
3.7
|
34.4
|
1.0
|
CA
|
B:LEU145
|
3.8
|
25.7
|
1.0
|
CG
|
B:ASN25
|
3.9
|
27.9
|
1.0
|
CB
|
B:LYS144
|
4.0
|
29.0
|
1.0
|
OD1
|
B:ASN25
|
4.1
|
23.9
|
1.0
|
C
|
B:LYS144
|
4.1
|
25.5
|
1.0
|
CG1
|
B:VAL42
|
4.1
|
27.0
|
1.0
|
OD2
|
B:ASP43
|
4.2
|
37.2
|
1.0
|
O
|
B:HOH439
|
4.3
|
32.5
|
1.0
|
CA
|
B:LYS144
|
4.4
|
29.2
|
1.0
|
CG
|
B:LEU145
|
4.7
|
24.4
|
1.0
|
OD1
|
B:ASP43
|
4.8
|
35.7
|
1.0
|
CG
|
B:ASP43
|
4.8
|
34.1
|
1.0
|
CD2
|
B:LEU145
|
4.8
|
24.8
|
1.0
|
O
|
B:LYS144
|
4.9
|
25.0
|
1.0
|
N
|
B:VAL146
|
4.9
|
23.3
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 7wn7
Go back to
Chlorine Binding Sites List in 7wn7
Chlorine binding site 3 out
of 3 in the Crystal Structure of Hearnpv P26
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Hearnpv P26 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:29.6
occ:1.00
|
O
|
B:HOH507
|
2.9
|
25.0
|
1.0
|
O
|
A:HOH524
|
3.0
|
24.8
|
1.0
|
OG
|
B:SER175
|
3.0
|
20.0
|
1.0
|
CA
|
B:GLY176
|
3.6
|
21.1
|
1.0
|
N
|
B:GLY176
|
3.6
|
20.7
|
1.0
|
CD
|
A:ARG259
|
3.6
|
23.4
|
1.0
|
CD
|
A:ARG257
|
3.7
|
25.4
|
1.0
|
C
|
B:SER175
|
3.8
|
21.0
|
1.0
|
CB
|
B:SER175
|
3.8
|
18.0
|
1.0
|
CG
|
A:ARG259
|
3.9
|
23.7
|
1.0
|
C
|
B:GLY176
|
3.9
|
20.4
|
1.0
|
O
|
B:SER175
|
4.0
|
20.9
|
1.0
|
CG
|
A:ARG257
|
4.0
|
22.3
|
1.0
|
NE2
|
B:GLN177
|
4.1
|
30.0
|
1.0
|
CG
|
B:GLN177
|
4.1
|
26.0
|
1.0
|
O
|
B:GLY176
|
4.2
|
17.9
|
1.0
|
O
|
B:HOH519
|
4.3
|
30.0
|
1.0
|
O
|
B:HOH549
|
4.4
|
39.5
|
1.0
|
N
|
B:GLN177
|
4.5
|
21.6
|
1.0
|
CA
|
B:SER175
|
4.5
|
20.1
|
1.0
|
CD
|
B:GLN177
|
4.6
|
31.7
|
1.0
|
CB
|
A:ARG259
|
4.6
|
20.8
|
1.0
|
O
|
B:HOH474
|
4.6
|
36.3
|
1.0
|
O
|
B:HOH543
|
4.7
|
27.0
|
1.0
|
N
|
A:ARG259
|
5.0
|
19.1
|
1.0
|
|
Reference:
M.Yin,
W.Kuang,
Q.Wang,
X.Wang,
C.Yuan,
Z.Lin,
H.Zhang,
F.Deng,
H.Jiang,
P.Gong,
Z.Zou,
Z.Hu,
M.Wang.
Dual Roles and Evolutionary Implications of P26/Poxin in Antagonizing Intracellular Cgas-Sting and Extracellular Melanization Immunity. Nat Commun 2022.
ISSN: ESSN 2041-1723
Page generated: Tue Jul 30 05:40:16 2024
|