Chlorine in PDB 7wqv: Crystal Structure of A Neutralizing Monoclonal Antibody (AB08) in Complex with Sars-Cov-2 Receptor-Binding Domain (Rbd)

The structure of Crystal Structure of A Neutralizing Monoclonal Antibody (AB08) in Complex with Sars-Cov-2 Receptor-Binding Domain (Rbd), PDB code: 7wqv was solved by J.Zha, L.Meng, X.Zhang, D.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.93 / 2.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	92.643, 116.742, 180.72, 90, 90.31, 90
R / Rfree (%)	22 / 25.1

The structure of Crystal Structure of A Neutralizing Monoclonal Antibody (AB08) in Complex with Sars-Cov-2 Receptor-Binding Domain (Rbd) also contains other interesting chemical elements:

Calcium

(Ca)

6 atoms

The binding sites of Chlorine atom in the Crystal Structure of A Neutralizing Monoclonal Antibody (AB08) in Complex with Sars-Cov-2 Receptor-Binding Domain (Rbd) (pdb code 7wqv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Neutralizing Monoclonal Antibody (AB08) in Complex with Sars-Cov-2 Receptor-Binding Domain (Rbd), PDB code: 7wqv:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of A Neutralizing Monoclonal Antibody (AB08) in Complex with Sars-Cov-2 Receptor-Binding Domain (Rbd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Neutralizing Monoclonal Antibody (AB08) in Complex with Sars-Cov-2 Receptor-Binding Domain (Rbd) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1203 b:35.0 occ:1.00 NZ B:LYS99 2.7 59.0 1.0 OG B:SER35 2.9 40.4 1.0 NE1 B:TRP47 3.3 40.9 1.0 CA B:GLY50 3.4 40.9 1.0 N B:GLY50 3.4 43.7 1.0 CZ2 B:TRP47 3.5 42.3 1.0 CE B:LYS99 3.5 51.9 1.0 C B:GLY49 3.7 36.6 1.0 CE2 B:TRP47 3.7 41.7 1.0 CD B:LYS99 3.8 49.0 1.0 O B:GLY49 3.9 37.1 1.0 CB B:SER35 4.0 35.8 1.0 C B:GLY50 4.1 40.8 1.0 CG2 B:THR33 4.4 44.4 1.0 CA B:GLY49 4.4 40.6 1.0 CB B:ASN59 4.4 50.6 1.0 O B:GLY50 4.5 39.0 1.0 CD1 B:TRP47 4.5 38.4 1.0 O B:ASN59 4.6 40.7 1.0 CA B:SER35 4.7 43.6 1.0 ND2 B:ASN59 4.7 56.4 1.0 CH2 B:TRP47 4.7 40.9 1.0 N B:ILE51 4.7 50.3 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of A Neutralizing Monoclonal Antibody (AB08) in Complex with Sars-Cov-2 Receptor-Binding Domain (Rbd)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Neutralizing Monoclonal Antibody (AB08) in Complex with Sars-Cov-2 Receptor-Binding Domain (Rbd) within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl601 b:44.8 occ:1.00 N G:PHE377 3.9 65.6 1.0 O G:SER375 4.0 54.4 1.0 CA G:THR376 4.1 63.3 1.0 CE G:LYS378 4.3 69.1 1.0 CG G:LYS378 4.3 66.3 1.0 C G:THR376 4.5 61.5 1.0 O G:PHE377 4.6 55.8 1.0 CG2 G:THR376 4.7 54.6 1.0 C G:PHE377 4.7 54.5 1.0 CB G:THR376 4.8 57.3 1.0 OG1 G:THR376 4.8 54.8 1.0 CA G:PHE377 4.9 60.7 1.0 C G:SER375 4.9 55.4 1.0 N G:THR376 5.0 58.5 1.0 CD G:LYS378 5.0 70.6 1.0

L.Meng, J.Zha, D.Li, X.Zhang. Crystal Structure of A Neutralizing Monoclonal Antibody (AB08) in Complex with Sars-Cov-2 Receptor-Binding Domain (Rbd) To Be Published.