Chlorine in PDB 7xhh: High-Resolution X-Ray Cocrystal Structure of USP7 in Complex with X4
Enzymatic activity of High-Resolution X-Ray Cocrystal Structure of USP7 in Complex with X4
All present enzymatic activity of High-Resolution X-Ray Cocrystal Structure of USP7 in Complex with X4:
3.4.19.12;
Protein crystallography data
The structure of High-Resolution X-Ray Cocrystal Structure of USP7 in Complex with X4, PDB code: 7xhh
was solved by
H.B.Sun,
X.A.Wen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.45 /
2.10
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
76.034,
68.904,
81.788,
90,
100.32,
90
|
R / Rfree (%)
|
19.6 /
21.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the High-Resolution X-Ray Cocrystal Structure of USP7 in Complex with X4
(pdb code 7xhh). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
High-Resolution X-Ray Cocrystal Structure of USP7 in Complex with X4, PDB code: 7xhh:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 7xhh
Go back to
Chlorine Binding Sites List in 7xhh
Chlorine binding site 1 out
of 2 in the High-Resolution X-Ray Cocrystal Structure of USP7 in Complex with X4
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of High-Resolution X-Ray Cocrystal Structure of USP7 in Complex with X4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl601
b:70.5
occ:1.00
|
CL1
|
A:DYO601
|
0.0
|
70.5
|
1.0
|
C14
|
A:DYO601
|
1.8
|
62.9
|
1.0
|
H9
|
A:DYO601
|
2.7
|
71.0
|
1.0
|
C15
|
A:DYO601
|
2.8
|
67.4
|
1.0
|
C13
|
A:DYO601
|
2.9
|
61.1
|
1.0
|
H1
|
A:DYO601
|
2.9
|
81.0
|
1.0
|
H20
|
A:DYO601
|
3.1
|
69.4
|
1.0
|
C12
|
A:DYO601
|
3.3
|
59.1
|
1.0
|
CD
|
A:LYS420
|
3.4
|
65.5
|
1.0
|
H21
|
A:DYO601
|
3.4
|
69.4
|
1.0
|
O
|
A:ARG408
|
3.5
|
67.8
|
1.0
|
C33
|
A:DYO601
|
3.6
|
57.8
|
1.0
|
CE
|
A:LYS420
|
3.6
|
62.1
|
1.0
|
CB
|
A:ARG408
|
3.7
|
61.3
|
1.0
|
CG
|
A:LYS420
|
3.7
|
67.3
|
1.0
|
C
|
A:ARG408
|
3.8
|
65.8
|
1.0
|
N10
|
A:DYO601
|
4.0
|
56.0
|
1.0
|
H8
|
A:DYO601
|
4.0
|
71.0
|
1.0
|
CB
|
A:LYS420
|
4.2
|
70.7
|
1.0
|
C16
|
A:DYO601
|
4.2
|
67.7
|
1.0
|
ND1
|
A:HIS456
|
4.2
|
60.9
|
1.0
|
C18
|
A:DYO601
|
4.3
|
64.1
|
1.0
|
N
|
A:PHE409
|
4.3
|
66.6
|
1.0
|
CA
|
A:ARG408
|
4.4
|
62.7
|
1.0
|
O06
|
A:DYO601
|
4.4
|
55.6
|
1.0
|
CB
|
A:PHE409
|
4.5
|
72.2
|
1.0
|
H30
|
A:DYO601
|
4.6
|
67.3
|
1.0
|
NZ
|
A:LYS420
|
4.6
|
57.2
|
1.0
|
CA
|
A:LYS420
|
4.7
|
72.1
|
1.0
|
CE1
|
A:HIS456
|
4.7
|
62.6
|
1.0
|
CA
|
A:PHE409
|
4.8
|
72.5
|
1.0
|
CG
|
A:HIS456
|
4.8
|
60.6
|
1.0
|
C17
|
A:DYO601
|
4.8
|
67.0
|
1.0
|
C35
|
A:DYO601
|
4.9
|
56.0
|
1.0
|
CG
|
A:ARG408
|
4.9
|
60.6
|
1.0
|
C32
|
A:DYO601
|
5.0
|
57.3
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 7xhh
Go back to
Chlorine Binding Sites List in 7xhh
Chlorine binding site 2 out
of 2 in the High-Resolution X-Ray Cocrystal Structure of USP7 in Complex with X4
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of High-Resolution X-Ray Cocrystal Structure of USP7 in Complex with X4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl601
b:63.0
occ:1.00
|
CL1
|
B:DYO601
|
0.0
|
63.0
|
1.0
|
C14
|
B:DYO601
|
1.8
|
58.5
|
1.0
|
H8
|
B:DYO601
|
2.7
|
64.8
|
1.0
|
H20
|
B:DYO601
|
2.8
|
58.8
|
1.0
|
C15
|
B:DYO601
|
2.8
|
60.8
|
1.0
|
C13
|
B:DYO601
|
2.9
|
51.3
|
1.0
|
H1
|
B:DYO601
|
2.9
|
73.0
|
1.0
|
C12
|
B:DYO601
|
3.2
|
53.9
|
1.0
|
H21
|
B:DYO601
|
3.3
|
58.8
|
1.0
|
O
|
B:ARG408
|
3.3
|
59.4
|
1.0
|
C33
|
B:DYO601
|
3.4
|
48.9
|
1.0
|
CB
|
B:ARG408
|
3.6
|
55.6
|
1.0
|
C
|
B:ARG408
|
3.7
|
61.1
|
1.0
|
CG
|
B:LYS420
|
3.8
|
62.6
|
1.0
|
CE
|
B:LYS420
|
3.8
|
58.5
|
1.0
|
N10
|
B:DYO601
|
3.8
|
50.8
|
1.0
|
CD
|
B:LYS420
|
3.9
|
61.0
|
1.0
|
H9
|
B:DYO601
|
4.0
|
64.8
|
1.0
|
O06
|
B:DYO601
|
4.2
|
49.9
|
1.0
|
N
|
B:PHE409
|
4.2
|
59.8
|
1.0
|
C16
|
B:DYO601
|
4.2
|
61.1
|
1.0
|
C18
|
B:DYO601
|
4.3
|
56.1
|
1.0
|
CA
|
B:ARG408
|
4.3
|
56.8
|
1.0
|
CB
|
B:LYS420
|
4.3
|
62.8
|
1.0
|
ND1
|
B:HIS456
|
4.4
|
55.7
|
1.0
|
H30
|
B:DYO601
|
4.4
|
59.4
|
1.0
|
CB
|
B:PHE409
|
4.5
|
61.8
|
1.0
|
H6
|
B:DYO601
|
4.7
|
52.2
|
1.0
|
CE1
|
B:HIS456
|
4.7
|
59.0
|
1.0
|
CA
|
B:PHE409
|
4.7
|
64.4
|
1.0
|
C35
|
B:DYO601
|
4.7
|
49.4
|
1.0
|
CA
|
B:LYS420
|
4.8
|
66.8
|
1.0
|
C32
|
B:DYO601
|
4.8
|
48.1
|
1.0
|
C17
|
B:DYO601
|
4.8
|
62.8
|
1.0
|
NZ
|
B:LYS420
|
4.8
|
52.7
|
1.0
|
H19
|
B:DYO601
|
4.8
|
57.9
|
1.0
|
CG
|
B:ARG408
|
4.8
|
53.5
|
1.0
|
CG
|
B:HIS456
|
5.0
|
54.6
|
1.0
|
H10
|
B:DYO601
|
5.0
|
67.5
|
1.0
|
|
Reference:
X.A.Wen,
H.B.Sun,
X.A.Wen.
N/A N/A.
Page generated: Tue Jul 30 05:47:22 2024
|