Chlorine in PDB 7xro: Lysr-Family Transcriptional Regulator Ripr Effector Binding Domain with Its Effector, 3-Phenylpropionic Acid

Protein crystallography data

The structure of Lysr-Family Transcriptional Regulator Ripr Effector Binding Domain with Its Effector, 3-Phenylpropionic Acid, PDB code: 7xro was solved by N.Ki, N.-C.Ha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.70 / 2.80
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 83.107, 83.107, 172.199, 90, 90, 120
R / Rfree (%) 21.3 / 25.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Lysr-Family Transcriptional Regulator Ripr Effector Binding Domain with Its Effector, 3-Phenylpropionic Acid (pdb code 7xro). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Lysr-Family Transcriptional Regulator Ripr Effector Binding Domain with Its Effector, 3-Phenylpropionic Acid, PDB code: 7xro:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7xro

Go back to Chlorine Binding Sites List in 7xro
Chlorine binding site 1 out of 2 in the Lysr-Family Transcriptional Regulator Ripr Effector Binding Domain with Its Effector, 3-Phenylpropionic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Lysr-Family Transcriptional Regulator Ripr Effector Binding Domain with Its Effector, 3-Phenylpropionic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:96.2
occ:1.00
NH2 B:ARG276 2.8 104.7 1.0
CZ B:ARG276 4.0 88.5 1.0
OE1 B:GLN158 4.4 76.0 1.0
NH1 B:ARG276 4.4 59.7 1.0
NE2 B:GLN158 4.5 76.1 1.0
CD B:GLN158 4.9 72.3 1.0

Chlorine binding site 2 out of 2 in 7xro

Go back to Chlorine Binding Sites List in 7xro
Chlorine binding site 2 out of 2 in the Lysr-Family Transcriptional Regulator Ripr Effector Binding Domain with Its Effector, 3-Phenylpropionic Acid


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Lysr-Family Transcriptional Regulator Ripr Effector Binding Domain with Its Effector, 3-Phenylpropionic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:90.3
occ:1.00
OH B:TYR274 3.1 71.6 1.0
CG B:GLN158 4.0 61.0 1.0
NH2 B:ARG160 4.0 88.4 1.0
CZ B:TYR274 4.1 69.4 1.0
CE2 B:TYR274 4.2 66.8 1.0
OE1 B:GLN158 4.2 76.0 1.0
NH1 B:ARG284 4.2 124.4 1.0
CD B:GLN158 4.3 72.3 1.0
NE B:ARG160 4.5 88.1 1.0
CZ B:ARG160 4.7 78.8 1.0
O B:HOH406 4.8 88.2 1.0

Reference:

N.Ki, N.-C.Ha. The Activation Mechanism of the Itaconic Acid-Responsive Lttr Ripr in the Pathogenesis of the Foodborne-Pathogen Salmonella Enterica To Be Published.
Page generated: Wed Jul 26 15:09:30 2023

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