Chlorine in PDB 7y5t: Cryoem Structure of PS1-Containing Gamma-Secretase in Complex with Mrk-560

The structure of Cryoem Structure of PS1-Containing Gamma-Secretase in Complex with Mrk-560 also contains other interesting chemical elements:

Fluorine

(F)

5 atoms

The binding sites of Chlorine atom in the Cryoem Structure of PS1-Containing Gamma-Secretase in Complex with Mrk-560 (pdb code 7y5t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Cryoem Structure of PS1-Containing Gamma-Secretase in Complex with Mrk-560, PDB code: 7y5t:

Chlorine binding site 1 out of 1 in the Cryoem Structure of PS1-Containing Gamma-Secretase in Complex with Mrk-560


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryoem Structure of PS1-Containing Gamma-Secretase in Complex with Mrk-560 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl502 b:108.6 occ:1.00 CL1 B:IGD502 0.0 108.6 1.0 C32 B:IGD502 1.8 108.6 1.0 C30 B:IGD502 2.7 108.6 1.0 C31 B:IGD502 2.8 108.6 1.0 CD2 B:LEU422 3.6 86.9 1.0 CG B:LEU422 3.7 86.9 1.0 CD1 B:LEU418 3.9 77.5 1.0 C24 B:IGD502 4.0 108.6 1.0 C25 B:IGD502 4.1 108.6 1.0 CG2 B:THR421 4.1 84.2 1.0 CD1 B:LEU381 4.1 87.9 1.0 CD1 B:LEU85 4.1 79.0 1.0 CB B:ALA434 4.4 91.3 1.0 CB B:THR421 4.5 84.2 1.0 N B:LEU422 4.5 86.9 1.0 CD1 B:LEU422 4.5 86.9 1.0 O B:LEU418 4.5 77.5 1.0 C21 B:IGD502 4.6 108.6 1.0 CA B:LEU422 4.8 86.9 1.0 CB B:LEU422 4.8 86.9 1.0 C B:THR421 4.8 84.2 1.0 CG B:LEU418 4.9 77.5 1.0

X.Guo, Y.Wang, J.Zhou, C.Jin, J.Wang, B.Jia, D.Jing, C.Yan, J.Lei, R.Zhou, Y.Shi. Molecular Basis For Isoform-Selective Inhibition of Presenilin-1 By Mrk-560. Nat Commun V. 13 6299 2022.
ISSN: ESSN 2041-1723
PubMed: 36272978
DOI: 10.1038/S41467-022-33817-5