Chlorine in PDB 7y6i: Cryo-Em Structure of Human Sodium-Chloride Cotransporter

Other elements in 7y6i:

The structure of Cryo-Em Structure of Human Sodium-Chloride Cotransporter also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of Human Sodium-Chloride Cotransporter (pdb code 7y6i). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Cryo-Em Structure of Human Sodium-Chloride Cotransporter, PDB code: 7y6i:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 7y6i

Go back to Chlorine Binding Sites List in 7y6i
Chlorine binding site 1 out of 4 in the Cryo-Em Structure of Human Sodium-Chloride Cotransporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Human Sodium-Chloride Cotransporter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1101

b:56.1
occ:1.00
 NA A:NA1102 3.1 31.5 1.0
O A:PRO349 3.2 19.9 1.0
O A:HOH1201 3.2 30.0 1.0
CA A:GLY152 3.4 28.2 1.0
CA A:SER350 3.5 21.7 1.0
N A:VAL153 3.5 40.1 1.0
C A:PRO349 3.7 21.4 1.0
N A:GLY152 3.7 34.3 1.0
N A:SER350 3.8 24.1 1.0
C A:GLY152 3.8 31.3 1.0
NE2 A:HIS234 3.9 28.4 1.0
O A:ILE150 3.9 41.3 1.0
N A:ILE154 4.0 25.5 1.0
OG A:SER350 4.2 29.1 1.0
CG1 A:ILE154 4.2 25.5 1.0
CB A:SER350 4.2 14.2 1.0
CB A:ILE154 4.3 31.8 1.0
C A:SER350 4.6 27.4 1.0
CE A:MET233 4.6 28.6 1.0
CG1 A:VAL153 4.6 22.1 1.0
C A:TRP151 4.7 24.1 1.0
CD2 A:HIS234 4.7 28.3 1.0
CE1 A:HIS234 4.7 34.5 1.0
CA A:VAL153 4.7 34.1 1.0
CA A:ILE154 4.7 28.3 1.0
CB A:PRO349 4.8 28.1 1.0
C A:VAL153 4.8 30.9 1.0
O A:SER350 4.8 28.9 1.0
CA A:PRO349 4.9 22.6 1.0
O A:GLY152 4.9 34.0 1.0
N A:LEU155 4.9 29.1 1.0

Chlorine binding site 2 out of 4 in 7y6i

Go back to Chlorine Binding Sites List in 7y6i
Chlorine binding site 2 out of 4 in the Cryo-Em Structure of Human Sodium-Chloride Cotransporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of Human Sodium-Chloride Cotransporter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1103

b:41.3
occ:1.00
 OH A:TYR540 2.6 26.7 1.0
N A:GLY353 3.1 29.7 1.0
CE1 A:PHE536 3.3 31.4 1.0
CA A:GLY353 3.5 21.7 1.0
N A:ILE354 3.5 33.8 1.0
N A:LEU355 3.6 42.5 1.0
CB A:LEU355 3.6 38.3 1.0
CZ A:TYR540 3.6 29.5 1.0
CE1 A:PHE223 3.7 33.0 1.0
CD1 A:LEU355 3.7 39.0 1.0
C A:GLY353 3.7 26.7 1.0
CE1 A:TYR540 3.8 28.1 1.0
CD1 A:PHE536 4.0 27.6 1.0
CG A:LEU355 4.1 36.2 1.0
O A:HOH1202 4.1 30.0 1.0
CZ A:PHE536 4.1 28.7 1.0
CA A:LEU355 4.2 39.3 1.0
C A:THR352 4.3 26.4 1.0
CZ A:PHE223 4.3 37.9 1.0
CG1 A:ILE354 4.4 33.6 1.0
C A:ILE354 4.5 36.6 1.0
CA A:ILE354 4.5 30.7 1.0
CB A:THR352 4.5 23.6 1.0
CA A:THR352 4.6 22.9 1.0
O A:GLY353 4.6 32.4 1.0
CD1 A:PHE223 4.7 29.1 1.0
CE2 A:TYR540 4.9 25.5 1.0

Chlorine binding site 3 out of 4 in 7y6i

Go back to Chlorine Binding Sites List in 7y6i
Chlorine binding site 3 out of 4 in the Cryo-Em Structure of Human Sodium-Chloride Cotransporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of Human Sodium-Chloride Cotransporter within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1103

b:50.0
occ:1.00
 O B:HOH1201 3.1 19.9 1.0
NA B:NA1104 3.1 33.1 1.0
O B:PRO349 3.2 21.5 1.0
CA B:GLY152 3.4 23.6 1.0
N B:VAL153 3.6 38.0 1.0
CA B:SER350 3.6 14.0 1.0
N B:GLY152 3.6 30.6 1.0
C B:PRO349 3.6 23.8 1.0
C B:GLY152 3.7 27.7 1.0
O B:ILE150 3.8 36.1 1.0
N B:SER350 3.8 25.0 1.0
NE2 B:HIS234 3.9 25.8 1.0
N B:ILE154 4.0 23.5 1.0
CG1 B:ILE154 4.0 24.9 1.0
OG B:SER350 4.3 28.1 1.0
CB B:ILE154 4.4 32.3 1.0
CG2 B:VAL153 4.4 24.6 1.0
CB B:SER350 4.5 13.2 1.0
C B:TRP151 4.5 27.5 1.0
CB B:PRO349 4.5 26.8 1.0
CE B:MET233 4.6 27.1 1.0
C B:SER350 4.6 23.3 1.0
O B:GLY152 4.7 30.0 1.0
CD2 B:HIS234 4.7 24.3 1.0
CE1 B:HIS234 4.7 31.6 1.0
CA B:VAL153 4.7 34.2 1.0
CA B:PRO349 4.7 18.2 1.0
CA B:ILE154 4.8 28.7 1.0
C B:VAL153 4.8 31.3 1.0
O B:SER350 4.9 25.0 1.0
C B:ILE150 4.9 27.4 1.0
N B:LEU155 5.0 28.4 1.0

Chlorine binding site 4 out of 4 in 7y6i

Go back to Chlorine Binding Sites List in 7y6i
Chlorine binding site 4 out of 4 in the Cryo-Em Structure of Human Sodium-Chloride Cotransporter


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of Human Sodium-Chloride Cotransporter within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1105

b:39.0
occ:1.00
 OH B:TYR540 2.7 29.9 1.0
N B:GLY353 3.1 32.9 1.0
CE1 B:PHE536 3.4 28.0 1.0
N B:LEU355 3.4 45.2 1.0
CA B:GLY353 3.5 23.1 1.0
N B:ILE354 3.5 34.2 1.0
CB B:LEU355 3.6 38.7 1.0
C B:GLY353 3.7 26.3 1.0
CZ B:TYR540 3.7 29.2 1.0
CE1 B:PHE223 3.7 32.6 1.0
O B:HOH1202 3.9 38.8 1.0
CE1 B:TYR540 3.9 25.4 1.0
CD1 B:LEU355 3.9 40.6 1.0
CD1 B:PHE536 4.0 26.2 1.0
CA B:LEU355 4.1 39.4 1.0
CG B:LEU355 4.2 37.7 1.0
C B:THR352 4.3 26.7 1.0
CZ B:PHE536 4.3 25.1 1.0
CZ B:PHE223 4.4 37.6 1.0
C B:ILE354 4.4 40.7 1.0
CB B:THR352 4.5 21.3 1.0
CA B:ILE354 4.5 36.3 1.0
CG1 B:ILE354 4.5 36.8 1.0
CA B:THR352 4.6 18.8 1.0
O B:GLY353 4.6 30.0 1.0
N B:ALA356 4.7 47.8 1.0
CD1 B:PHE223 4.7 30.0 1.0
C B:LEU355 4.8 41.2 1.0
CE2 B:TYR540 5.0 26.9 1.0

Reference:

J.Nan, Y.Yuan, X.Yang, Z.Shan, H.Liu, F.Wei, W.Zhang, Y.Zhang. Cryo-Em Structure of the Human Sodium-Chloride Cotransporter Ncc. Sci Adv V. 8 D7176 2022.
ISSN: ESSN 2375-2548
PubMed: 36351028
DOI: 10.1126/SCIADV.ADD7176
Page generated: Tue Jul 30 05:55:01 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy