Chlorine in PDB 7yd2: SULE_P44R_S209A
Protein crystallography data
The structure of SULE_P44R_S209A, PDB code: 7yd2
was solved by
B.Liu,
T.Ran,
W.Wang,
J.He,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.30 /
1.61
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
51.31,
140.26,
58.19,
90,
101.71,
90
|
R / Rfree (%)
|
16.5 /
18.1
|
Other elements in 7yd2:
The structure of SULE_P44R_S209A also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the SULE_P44R_S209A
(pdb code 7yd2). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
SULE_P44R_S209A, PDB code: 7yd2:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 7yd2
Go back to
Chlorine Binding Sites List in 7yd2
Chlorine binding site 1 out
of 3 in the SULE_P44R_S209A
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of SULE_P44R_S209A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl405
b:65.8
occ:1.00
|
CL
|
A:IJC405
|
0.0
|
65.8
|
1.0
|
C9
|
A:IJC405
|
1.8
|
39.5
|
1.0
|
N2
|
A:IJC405
|
2.7
|
37.3
|
1.0
|
C10
|
A:IJC405
|
2.8
|
37.6
|
1.0
|
O
|
B:ARG44
|
2.9
|
43.3
|
1.0
|
O
|
A:ASN141
|
3.4
|
30.3
|
1.0
|
OD1
|
B:ASN123
|
3.6
|
25.4
|
1.0
|
C
|
B:ARG44
|
3.9
|
47.5
|
1.0
|
N
|
B:ARG44
|
4.0
|
48.0
|
1.0
|
C8
|
A:IJC405
|
4.0
|
39.9
|
1.0
|
C11
|
A:IJC405
|
4.0
|
37.6
|
1.0
|
C
|
A:ASN141
|
4.0
|
26.9
|
1.0
|
CG
|
B:ASN123
|
4.4
|
23.2
|
1.0
|
N
|
A:ASN141
|
4.4
|
22.9
|
1.0
|
ND2
|
B:ASN123
|
4.5
|
25.6
|
1.0
|
N3
|
A:IJC405
|
4.5
|
34.9
|
1.0
|
CA
|
B:ARG44
|
4.6
|
51.7
|
1.0
|
N
|
A:SER142
|
4.6
|
25.5
|
1.0
|
CA
|
A:SER142
|
4.7
|
25.6
|
1.0
|
O
|
B:VAL42
|
4.7
|
32.3
|
1.0
|
CA
|
B:ILE43
|
4.8
|
35.8
|
1.0
|
N
|
B:TYR45
|
4.8
|
48.7
|
1.0
|
C
|
B:ILE43
|
4.8
|
44.4
|
1.0
|
CA
|
A:ASN141
|
4.9
|
21.1
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 7yd2
Go back to
Chlorine Binding Sites List in 7yd2
Chlorine binding site 2 out
of 3 in the SULE_P44R_S209A
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of SULE_P44R_S209A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl402
b:63.9
occ:1.00
|
CL4'
|
B:CIE402
|
0.0
|
63.9
|
1.0
|
C4'
|
B:CIE402
|
1.8
|
32.6
|
1.0
|
N3'
|
B:CIE402
|
2.7
|
31.3
|
1.0
|
C5'
|
B:CIE402
|
2.8
|
32.6
|
1.0
|
CE1
|
B:PHE61
|
3.2
|
32.8
|
1.0
|
CZ
|
B:PHE61
|
3.6
|
32.3
|
1.0
|
O
|
B:SER22
|
3.7
|
16.0
|
1.0
|
CA
|
A:GLY91
|
3.9
|
18.4
|
1.0
|
C2'
|
B:CIE402
|
3.9
|
32.4
|
1.0
|
N
|
B:SER22
|
3.9
|
16.1
|
1.0
|
OG
|
A:SER87
|
4.0
|
17.4
|
1.0
|
O
|
A:GLY91
|
4.1
|
23.5
|
1.0
|
C6'
|
B:CIE402
|
4.1
|
32.2
|
1.0
|
O
|
A:HOH561
|
4.2
|
29.9
|
1.0
|
C
|
B:SER22
|
4.2
|
15.3
|
1.0
|
CD1
|
B:PHE23
|
4.3
|
19.8
|
1.0
|
CA
|
B:GLY21
|
4.3
|
21.2
|
1.0
|
CD1
|
B:PHE61
|
4.3
|
22.4
|
1.0
|
C
|
B:GLY21
|
4.3
|
18.9
|
1.0
|
O
|
A:HOH636
|
4.4
|
20.1
|
1.0
|
C
|
A:GLY91
|
4.4
|
19.6
|
1.0
|
O
|
B:HOH607
|
4.5
|
30.7
|
1.0
|
CB
|
A:SER87
|
4.5
|
16.6
|
1.0
|
N1'
|
B:CIE402
|
4.5
|
29.5
|
1.0
|
CA
|
B:SER22
|
4.6
|
14.3
|
1.0
|
CB
|
B:PHE23
|
4.6
|
17.6
|
1.0
|
N14
|
B:CIE402
|
4.9
|
31.7
|
1.0
|
CG
|
B:PHE23
|
4.9
|
16.5
|
1.0
|
CE2
|
B:PHE61
|
5.0
|
27.6
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 7yd2
Go back to
Chlorine Binding Sites List in 7yd2
Chlorine binding site 3 out
of 3 in the SULE_P44R_S209A
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of SULE_P44R_S209A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl403
b:74.3
occ:1.00
|
CL
|
B:IJC403
|
0.0
|
74.3
|
1.0
|
C9
|
B:IJC403
|
1.8
|
39.9
|
1.0
|
N2
|
B:IJC403
|
2.7
|
40.6
|
1.0
|
C10
|
B:IJC403
|
2.8
|
38.0
|
1.0
|
O
|
A:ARG44
|
3.0
|
47.2
|
1.0
|
O
|
B:ASN141
|
3.4
|
27.7
|
1.0
|
OD1
|
A:ASN123
|
3.7
|
25.6
|
1.0
|
N
|
A:ARG44
|
3.9
|
43.5
|
1.0
|
C8
|
B:IJC403
|
4.0
|
37.5
|
1.0
|
C
|
A:ARG44
|
4.0
|
46.4
|
1.0
|
C
|
B:ASN141
|
4.0
|
23.6
|
1.0
|
C11
|
B:IJC403
|
4.0
|
38.6
|
1.0
|
O
|
A:HOH729
|
4.1
|
44.1
|
1.0
|
CG
|
A:ASN123
|
4.4
|
25.2
|
1.0
|
N
|
B:ASN141
|
4.4
|
21.3
|
1.0
|
ND2
|
A:ASN123
|
4.5
|
25.8
|
1.0
|
N3
|
B:IJC403
|
4.5
|
37.2
|
1.0
|
N
|
B:SER142
|
4.5
|
23.2
|
1.0
|
CA
|
B:SER142
|
4.5
|
25.6
|
1.0
|
O
|
A:VAL42
|
4.6
|
35.6
|
1.0
|
CA
|
A:ARG44
|
4.6
|
47.1
|
1.0
|
CA
|
A:ILE43
|
4.7
|
36.3
|
1.0
|
C
|
A:ILE43
|
4.7
|
43.9
|
1.0
|
CA
|
B:ASN141
|
4.9
|
23.3
|
1.0
|
CG2
|
A:ILE43
|
5.0
|
36.3
|
1.0
|
|
Reference:
B.Liu,
T.Ran,
W.Wang,
J.He.
Crystal Structure of SULE_P44R To Be Published.
Page generated: Tue Jul 30 05:58:56 2024
|