Chlorine in PDB 7yd3: Single-Chain Variable Fragment of App 3D1 Antibody

The structure of Single-Chain Variable Fragment of App 3D1 Antibody, PDB code: 7yd3 was solved by L.Yan, G.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.92 / 2.16
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	47.183, 70.49, 74.815, 108.83, 93.82, 90.09
R / Rfree (%)	21.7 / 25.4

The binding sites of Chlorine atom in the Single-Chain Variable Fragment of App 3D1 Antibody (pdb code 7yd3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Single-Chain Variable Fragment of App 3D1 Antibody, PDB code: 7yd3:

Chlorine binding site 1 out of 1 in the Single-Chain Variable Fragment of App 3D1 Antibody


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Single-Chain Variable Fragment of App 3D1 Antibody within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl201 b:30.0 occ:1.00 O C:HOH352 2.9 20.1 1.0 O C:HOH324 3.8 26.6 1.0 O D:GLY103 4.2 13.9 1.0 O D:GLY104 4.5 9.6 1.0 O D:HOH330 4.6 22.3 1.0 OD1 D:ASP87 4.7 12.1 1.0 C D:GLY104 4.8 10.7 1.0 O C:GLY42 4.8 18.1 1.0 OH D:TYR89 4.9 12.8 1.0

L.Yan, G.Yang. Cross-Reactive Epitopes Between Hiv and Coronavirus Revealed By 3D1 To Be Published.