Chlorine in PDB 7yqn: Crystal Structure of Ecoli Malate Synthase G

Enzymatic activity of Crystal Structure of Ecoli Malate Synthase G

All present enzymatic activity of Crystal Structure of Ecoli Malate Synthase G:
2.3.3.9;

Protein crystallography data

The structure of Crystal Structure of Ecoli Malate Synthase G, PDB code: 7yqn was solved by K.-P.Wu, Y.-C.Lu, T.-P.Ko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.45 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 98.935, 101.246, 170.239, 90, 90, 90
R / Rfree (%) 15.6 / 17.3

Other elements in 7yqn:

The structure of Crystal Structure of Ecoli Malate Synthase G also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ecoli Malate Synthase G (pdb code 7yqn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Ecoli Malate Synthase G, PDB code: 7yqn:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7yqn

Go back to Chlorine Binding Sites List in 7yqn
Chlorine binding site 1 out of 3 in the Crystal Structure of Ecoli Malate Synthase G


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ecoli Malate Synthase G within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl801

b:18.4
occ:1.00
NE1 A:TRP587 3.3 18.4 1.0
O A:HOH1645 3.3 48.8 1.0
N A:ARG472 3.3 12.8 1.0
NE A:ARG472 3.4 16.2 0.5
O A:HOH1511 3.6 53.0 1.0
CG A:GLN475 3.6 25.1 1.0
CG A:ARG472 3.7 14.6 1.0
CB A:ARG472 3.8 13.9 1.0
CE2 A:TRP587 4.0 16.1 1.0
CZ2 A:TRP587 4.0 16.0 1.0
CD2 A:LEU471 4.0 22.6 1.0
CA A:LEU471 4.0 12.6 1.0
CB A:GLN475 4.1 19.2 1.0
NH2 A:ARG472 4.1 25.0 0.5
CA A:ARG472 4.1 13.5 1.0
CB A:LEU471 4.1 12.1 1.0
C A:LEU471 4.2 15.5 1.0
CD A:ARG472 4.2 13.7 1.0
CZ A:ARG472 4.2 23.1 0.5
CD1 A:TRP587 4.4 19.3 1.0
O A:HOH1561 4.5 52.7 1.0
CG A:LEU471 4.7 14.5 1.0
CD A:GLN475 4.8 30.7 1.0

Chlorine binding site 2 out of 3 in 7yqn

Go back to Chlorine Binding Sites List in 7yqn
Chlorine binding site 2 out of 3 in the Crystal Structure of Ecoli Malate Synthase G


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Ecoli Malate Synthase G within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl802

b:51.9
occ:1.00
NE2 A:HIS237 2.8 21.0 1.0
NZ A:LYS232 3.4 37.1 1.0
CG1 A:VAL217 3.5 39.9 1.0
CE1 A:HIS237 3.6 21.9 1.0
CD2 A:HIS237 3.9 19.7 1.0
CD A:LYS232 4.0 27.2 1.0
CE A:LYS232 4.0 41.8 1.0
CG2 A:VAL217 4.3 35.6 1.0
CD2 A:LEU329 4.4 26.2 1.0
O A:HOH1722 4.4 29.3 1.0
CB A:VAL217 4.6 27.8 1.0
ND1 A:HIS237 4.8 18.1 1.0
CG A:HIS237 5.0 19.4 1.0

Chlorine binding site 3 out of 3 in 7yqn

Go back to Chlorine Binding Sites List in 7yqn
Chlorine binding site 3 out of 3 in the Crystal Structure of Ecoli Malate Synthase G


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Ecoli Malate Synthase G within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl801

b:18.9
occ:1.00
O B:HOH1613 3.1 40.1 1.0
NE1 B:TRP587 3.2 17.1 1.0
N B:ARG472 3.3 14.4 1.0
NE B:ARG472 3.5 14.7 0.5
C3 B:GOL806 3.5 51.9 1.0
CG B:GLN475 3.6 24.1 1.0
O B:HOH1314 3.7 45.7 1.0
CB B:ARG472 3.8 14.2 1.0
CG B:ARG472 3.8 14.0 1.0
CD2 B:LEU471 4.0 18.9 1.0
NH2 B:ARG472 4.0 18.1 0.5
CE2 B:TRP587 4.0 19.0 1.0
CA B:LEU471 4.0 15.2 1.0
CB B:GLN475 4.1 17.1 1.0
CZ2 B:TRP587 4.1 20.1 1.0
CB B:LEU471 4.1 16.0 1.0
CA B:ARG472 4.2 14.7 1.0
C B:LEU471 4.2 14.1 1.0
CZ B:ARG472 4.2 15.9 0.5
CD1 B:TRP587 4.3 19.9 1.0
C1 B:GOL806 4.3 47.6 1.0
CD B:ARG472 4.3 14.6 1.0
C2 B:GOL806 4.5 50.5 1.0
O3 B:GOL806 4.6 57.1 1.0
CD B:GLN475 4.7 30.0 1.0
CG B:LEU471 4.7 17.9 1.0
O2 B:GOL806 5.0 54.3 1.0

Reference:

K.-P.Wu, K.-P.Wu, Y.-C.Lu, T.-P.Ko. N/A N/A.
Page generated: Tue Apr 11 13:14:05 2023

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