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Chlorine in PDB 7yvv: ACMP1, R-4-Hydroxymandelate Synthase

Enzymatic activity of ACMP1, R-4-Hydroxymandelate Synthase

All present enzymatic activity of ACMP1, R-4-Hydroxymandelate Synthase:
1.13.11.27;

Protein crystallography data

The structure of ACMP1, R-4-Hydroxymandelate Synthase, PDB code: 7yvv was solved by B.Zhang, H.M.Ge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.60 / 2.10
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 71.13, 71.13, 56.281, 90, 90, 120
R / Rfree (%) 14.9 / 19.7

Other elements in 7yvv:

The structure of ACMP1, R-4-Hydroxymandelate Synthase also contains other interesting chemical elements:

Iron (Fe) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the ACMP1, R-4-Hydroxymandelate Synthase (pdb code 7yvv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the ACMP1, R-4-Hydroxymandelate Synthase, PDB code: 7yvv:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7yvv

Go back to Chlorine Binding Sites List in 7yvv
Chlorine binding site 1 out of 2 in the ACMP1, R-4-Hydroxymandelate Synthase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of ACMP1, R-4-Hydroxymandelate Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:31.6
occ:1.00
O A:HOH542 2.6 19.7 1.0
N A:VAL312 2.7 21.7 1.0
O A:ILE318 3.0 21.6 1.0
O A:HOH682 3.0 35.2 1.0
CG2 A:VAL312 3.3 24.8 1.0
CA A:SER311 3.4 18.5 1.0
CZ2 A:TRP30 3.4 24.0 1.0
C A:SER311 3.5 22.0 1.0
OG A:SER311 3.6 22.6 1.0
N A:HIS313 3.7 23.2 1.0
CA A:VAL312 3.7 26.0 1.0
CA A:PHE319 3.8 17.9 1.0
CE2 A:TRP30 3.9 21.1 1.0
C A:ILE318 3.9 19.3 1.0
CB A:VAL312 4.0 25.8 1.0
CH2 A:TRP30 4.0 23.4 1.0
C A:VAL312 4.1 28.0 1.0
O A:ARG310 4.1 24.3 1.0
CB A:SER311 4.1 19.4 1.0
NE1 A:TRP30 4.1 17.1 1.0
N A:PHE319 4.3 18.2 1.0
CG1 A:VAL312 4.3 24.2 1.0
CG2 A:ILE318 4.5 17.7 1.0
CB A:PHE319 4.5 17.3 1.0
N A:SER311 4.5 20.5 1.0
O A:HOH548 4.6 20.8 1.0
CB A:HIS313 4.6 21.3 1.0
CA A:HIS313 4.7 21.0 1.0
O A:SER311 4.7 27.2 1.0
C A:PHE319 4.7 16.2 1.0
C A:ARG310 4.7 20.6 1.0
CD2 A:TRP30 4.8 21.8 1.0
CZ3 A:TRP30 4.9 21.5 1.0

Chlorine binding site 2 out of 2 in 7yvv

Go back to Chlorine Binding Sites List in 7yvv
Chlorine binding site 2 out of 2 in the ACMP1, R-4-Hydroxymandelate Synthase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of ACMP1, R-4-Hydroxymandelate Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:34.5
occ:1.00
O A:HOH675 2.6 46.3 1.0
O A:VAL94 2.9 20.9 1.0
N A:TYR139 3.0 27.5 1.0
O A:HOH617 3.4 29.0 1.0
CG A:ARG93 3.7 22.1 1.0
O A:TYR139 3.7 34.9 1.0
CA A:GLU138 3.7 18.7 1.0
C A:VAL94 3.8 19.9 1.0
C A:GLU138 3.8 25.4 1.0
CA A:TYR139 3.9 33.6 1.0
CB A:TYR139 4.0 30.6 1.0
CD A:ARG93 4.1 24.8 1.0
CA A:THR95 4.1 26.3 1.0
CD2 A:TYR139 4.2 21.8 1.0
O A:VAL137 4.2 18.1 1.0
C A:TYR139 4.3 34.4 1.0
N A:THR95 4.3 19.7 1.0
CG A:GLU138 4.4 22.6 1.0
CB A:GLU138 4.5 22.0 1.0
CG A:TYR139 4.6 27.2 1.0
N A:VAL94 4.7 19.8 1.0
N A:GLU138 4.7 19.1 1.0
C A:THR95 4.8 26.0 1.0
NE A:ARG93 4.9 26.1 1.0
CA A:VAL94 4.9 20.5 1.0
C A:VAL137 4.9 16.8 1.0
O A:THR95 4.9 25.2 1.0

Reference:

B.Zhang, H.M.Ge. Characterization of ACMP1 As the Native R-4-Hydroxymandelate Synthase From Biosynthetic Pathway of Amycolamycins To Be Published.
Page generated: Thu Dec 28 02:59:12 2023

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