Chlorine in PDB 7zga: Structure of Yeast SEC14P with Ergoline

The structure of Structure of Yeast SEC14P with Ergoline, PDB code: 7zga was solved by Z.Hong, P.Johnen, G.Schaaf, F.Bono, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.53 / 2.30
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	87.498, 87.498, 110.068, 90, 90, 120
R / Rfree (%)	18.8 / 22.8

The binding sites of Chlorine atom in the Structure of Yeast SEC14P with Ergoline (pdb code 7zga). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Yeast SEC14P with Ergoline, PDB code: 7zga:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Structure of Yeast SEC14P with Ergoline


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Yeast SEC14P with Ergoline within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:122.2 occ:1.00 CL1 A:IUF301 0.0 122.2 1.0 C28 A:IUF301 1.8 119.3 1.0 C27 A:IUF301 2.7 107.6 1.0 CL2 A:IUF301 2.9 121.6 1.0 CL3 A:IUF301 3.0 119.8 1.0 O26 A:IUF301 3.8 89.1 1.0 CE1 A:PHE212 4.5 51.5 1.0 CD1 A:ILE240 4.5 48.0 1.0 CD1 A:PHE212 4.6 52.1 1.0 CZ A:PHE212 4.9 45.6 1.0 CG A:PHE212 4.9 42.4 1.0

Chlorine binding site 2 out of 3 in the Structure of Yeast SEC14P with Ergoline


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Yeast SEC14P with Ergoline within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:121.6 occ:1.00 CL2 A:IUF301 0.0 121.6 1.0 C28 A:IUF301 1.8 119.3 1.0 C27 A:IUF301 2.8 107.6 1.0 CL1 A:IUF301 2.9 122.2 1.0 CL3 A:IUF301 2.9 119.8 1.0 O26 A:IUF301 3.0 89.1 1.0 C25 A:IUF301 3.7 70.5 1.0 CG A:PHE212 3.8 42.4 1.0 CD2 A:PHE212 3.9 54.1 1.0 CB A:PHE212 4.0 35.4 1.0 CD1 A:ILE240 4.0 48.0 1.0 CE A:MET209 4.0 52.9 1.0 CG A:MET209 4.1 51.0 1.0 N23 A:IUF301 4.2 58.4 1.0 CD1 A:PHE212 4.3 52.1 1.0 SD A:MET209 4.3 58.9 1.0 C24 A:IUF301 4.4 52.5 1.0 CE2 A:PHE212 4.5 50.1 1.0 CG1 A:ILE240 4.5 44.4 1.0 O32 A:IUF301 4.5 66.8 1.0 CE1 A:PHE212 4.9 51.5 1.0 O21 A:IUF301 4.9 77.7 1.0 CZ A:PHE212 4.9 45.6 1.0

Chlorine binding site 3 out of 3 in the Structure of Yeast SEC14P with Ergoline


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Yeast SEC14P with Ergoline within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:119.8 occ:1.00 CL3 A:IUF301 0.0 119.8 1.0 C28 A:IUF301 1.8 119.3 1.0 C27 A:IUF301 2.7 107.6 1.0 CL2 A:IUF301 2.9 121.6 1.0 CL1 A:IUF301 3.0 122.2 1.0 O26 A:IUF301 3.7 89.1 1.0 O21 A:IUF301 4.1 77.7 1.0 O32 A:IUF301 4.1 66.8 1.0 C25 A:IUF301 4.1 70.5 1.0 CD1 A:ILE240 4.7 48.0 1.0

X.R.Chen, L.Poudel, Z.Hong, P.Johnen, S.Katti, A.Tripathi, A.H.Nile, S.M.Green, D.Khan, G.Schaaf, F.Bono, V.A.Bankaitis, T.I.Igumenova. Mechanisms By Which Small Molecules of Diverse Chemotypes Arrest SEC14 Lipid Transfer Activity. J.Biol.Chem. 02861 2023.
ISSN: ESSN 1083-351X
PubMed: 36603766
DOI: 10.1016/J.JBC.2022.102861