Chlorine in PDB 8a0u: Crystal Structure of TEAD3 in Complex with CPD4
Protein crystallography data
The structure of Crystal Structure of TEAD3 in Complex with CPD4, PDB code: 8a0u
was solved by
C.Scheufler,
J.Kallen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
24.64 /
2.90
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
65.265,
128.607,
156.107,
90,
90,
90
|
R / Rfree (%)
|
21.2 /
26.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of TEAD3 in Complex with CPD4
(pdb code 8a0u). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of TEAD3 in Complex with CPD4, PDB code: 8a0u:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 8a0u
Go back to
Chlorine Binding Sites List in 8a0u
Chlorine binding site 1 out
of 4 in the Crystal Structure of TEAD3 in Complex with CPD4
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of TEAD3 in Complex with CPD4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:32.9
occ:1.00
|
CL8
|
A:KMU502
|
0.0
|
32.9
|
1.0
|
C1
|
A:KMU502
|
1.8
|
29.9
|
1.0
|
C2
|
A:KMU502
|
2.7
|
28.3
|
1.0
|
C6
|
A:KMU502
|
2.7
|
28.5
|
1.0
|
C7
|
A:KMU502
|
3.1
|
28.5
|
1.0
|
C20
|
A:KMU502
|
3.3
|
28.9
|
1.0
|
C25
|
A:KMU502
|
3.4
|
29.9
|
1.0
|
N26
|
A:KMU502
|
3.4
|
29.9
|
1.0
|
CG1
|
A:VAL415
|
3.6
|
21.2
|
1.0
|
CD
|
A:LYS274
|
3.8
|
33.5
|
1.0
|
CB
|
A:ILE271
|
3.9
|
29.8
|
1.0
|
CB
|
A:LYS274
|
3.9
|
29.8
|
1.0
|
CG2
|
A:ILE271
|
3.9
|
29.6
|
1.0
|
C24
|
A:KMU502
|
3.9
|
28.2
|
1.0
|
CE2
|
A:PHE275
|
4.0
|
35.9
|
1.0
|
C5
|
A:KMU502
|
4.0
|
27.5
|
1.0
|
C3
|
A:KMU502
|
4.0
|
27.6
|
1.0
|
O27
|
A:KMU502
|
4.1
|
30.6
|
1.0
|
CG
|
A:LYS274
|
4.1
|
31.2
|
1.0
|
CA
|
A:ILE271
|
4.2
|
29.7
|
1.0
|
CG2
|
A:THR395
|
4.2
|
18.4
|
1.0
|
C21
|
A:KMU502
|
4.4
|
28.3
|
1.0
|
O
|
A:ILE271
|
4.4
|
29.9
|
1.0
|
C4
|
A:KMU502
|
4.5
|
27.4
|
1.0
|
CD2
|
A:PHE275
|
4.6
|
35.0
|
1.0
|
CB
|
A:VAL415
|
4.7
|
20.7
|
1.0
|
CE
|
A:LYS274
|
4.8
|
37.3
|
1.0
|
C23
|
A:KMU502
|
4.8
|
27.9
|
1.0
|
C
|
A:ILE271
|
4.9
|
29.9
|
1.0
|
CZ
|
A:PHE275
|
4.9
|
36.1
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 8a0u
Go back to
Chlorine Binding Sites List in 8a0u
Chlorine binding site 2 out
of 4 in the Crystal Structure of TEAD3 in Complex with CPD4
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of TEAD3 in Complex with CPD4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:33.5
occ:1.00
|
CL8
|
B:KMU502
|
0.0
|
33.5
|
1.0
|
C1
|
B:KMU502
|
1.7
|
31.6
|
1.0
|
C6
|
B:KMU502
|
2.7
|
30.4
|
1.0
|
C2
|
B:KMU502
|
2.7
|
30.9
|
1.0
|
C7
|
B:KMU502
|
3.0
|
30.3
|
1.0
|
C20
|
B:KMU502
|
3.3
|
30.3
|
1.0
|
C25
|
B:KMU502
|
3.4
|
30.6
|
1.0
|
CB
|
B:ILE271
|
3.7
|
32.6
|
1.0
|
N26
|
B:KMU502
|
3.7
|
30.9
|
1.0
|
CG1
|
B:VAL415
|
3.8
|
21.9
|
1.0
|
CG2
|
B:ILE271
|
3.8
|
32.4
|
1.0
|
CB
|
B:LYS274
|
3.8
|
35.5
|
1.0
|
C24
|
B:KMU502
|
3.8
|
30.0
|
1.0
|
CA
|
B:ILE271
|
3.9
|
33.2
|
1.0
|
O27
|
B:KMU502
|
4.0
|
30.3
|
1.0
|
CG
|
B:LYS274
|
4.0
|
36.9
|
1.0
|
C5
|
B:KMU502
|
4.0
|
29.5
|
1.0
|
C3
|
B:KMU502
|
4.0
|
30.1
|
1.0
|
CD
|
B:LYS274
|
4.0
|
38.9
|
1.0
|
CE2
|
B:PHE275
|
4.1
|
39.8
|
1.0
|
O
|
B:ILE271
|
4.2
|
33.0
|
1.0
|
C21
|
B:KMU502
|
4.3
|
29.9
|
1.0
|
C4
|
B:KMU502
|
4.5
|
29.4
|
1.0
|
CG2
|
B:THR395
|
4.6
|
23.9
|
1.0
|
C
|
B:ILE271
|
4.6
|
33.1
|
1.0
|
CD2
|
B:PHE275
|
4.6
|
39.0
|
1.0
|
C23
|
B:KMU502
|
4.8
|
29.6
|
1.0
|
CB
|
B:VAL415
|
4.8
|
21.7
|
1.0
|
CE
|
B:LYS274
|
4.9
|
42.6
|
1.0
|
O
|
B:GLN270
|
4.9
|
35.2
|
1.0
|
C22
|
B:KMU502
|
5.0
|
29.6
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 8a0u
Go back to
Chlorine Binding Sites List in 8a0u
Chlorine binding site 3 out
of 4 in the Crystal Structure of TEAD3 in Complex with CPD4
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of TEAD3 in Complex with CPD4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl502
b:41.6
occ:1.00
|
CL8
|
C:KMU502
|
0.0
|
41.6
|
1.0
|
C1
|
C:KMU502
|
1.7
|
41.0
|
1.0
|
C2
|
C:KMU502
|
2.7
|
41.0
|
1.0
|
C6
|
C:KMU502
|
2.8
|
40.4
|
1.0
|
C7
|
C:KMU502
|
3.2
|
40.1
|
1.0
|
CB
|
C:LYS274
|
3.3
|
44.8
|
1.0
|
C25
|
C:KMU502
|
3.4
|
39.9
|
1.0
|
CG
|
C:LYS274
|
3.5
|
46.4
|
1.0
|
C20
|
C:KMU502
|
3.5
|
39.9
|
1.0
|
CB
|
C:ILE271
|
3.7
|
41.1
|
1.0
|
O27
|
C:KMU502
|
3.7
|
39.8
|
1.0
|
CG1
|
C:VAL415
|
3.8
|
26.5
|
1.0
|
CG2
|
C:ILE271
|
3.8
|
41.4
|
1.0
|
N26
|
C:KMU502
|
3.9
|
40.2
|
1.0
|
C3
|
C:KMU502
|
4.0
|
41.0
|
1.0
|
C5
|
C:KMU502
|
4.0
|
40.3
|
1.0
|
CE1
|
C:PHE275
|
4.1
|
46.9
|
1.0
|
C24
|
C:KMU502
|
4.1
|
40.0
|
1.0
|
CA
|
C:ILE271
|
4.1
|
41.6
|
1.0
|
O
|
C:ILE271
|
4.3
|
43.4
|
1.0
|
C21
|
C:KMU502
|
4.5
|
39.9
|
1.0
|
NZ
|
C:LYS274
|
4.5
|
55.2
|
1.0
|
C4
|
C:KMU502
|
4.5
|
40.6
|
1.0
|
CD1
|
C:PHE275
|
4.5
|
46.3
|
1.0
|
CD
|
C:LYS274
|
4.5
|
49.5
|
1.0
|
CA
|
C:LYS274
|
4.7
|
45.0
|
1.0
|
C
|
C:ILE271
|
4.7
|
42.7
|
1.0
|
CB
|
C:VAL415
|
4.8
|
25.7
|
1.0
|
CG1
|
C:ILE271
|
5.0
|
41.5
|
1.0
|
C23
|
C:KMU502
|
5.0
|
39.9
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 8a0u
Go back to
Chlorine Binding Sites List in 8a0u
Chlorine binding site 4 out
of 4 in the Crystal Structure of TEAD3 in Complex with CPD4
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of TEAD3 in Complex with CPD4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl502
b:25.6
occ:1.00
|
CL8
|
D:KMU502
|
0.0
|
25.6
|
1.0
|
C1
|
D:KMU502
|
1.7
|
24.1
|
1.0
|
C6
|
D:KMU502
|
2.7
|
23.8
|
1.0
|
C2
|
D:KMU502
|
2.7
|
23.4
|
1.0
|
C7
|
D:KMU502
|
3.0
|
24.6
|
1.0
|
N26
|
D:KMU502
|
3.3
|
26.5
|
1.0
|
C25
|
D:KMU502
|
3.3
|
26.3
|
1.0
|
C20
|
D:KMU502
|
3.3
|
25.2
|
1.0
|
CD
|
D:LYS274
|
3.5
|
41.5
|
1.0
|
CB
|
D:LYS274
|
3.7
|
37.7
|
1.0
|
CG1
|
D:VAL415
|
3.8
|
21.5
|
1.0
|
CG
|
D:LYS274
|
3.8
|
38.5
|
1.0
|
C24
|
D:KMU502
|
3.9
|
24.6
|
1.0
|
CB
|
D:ILE271
|
4.0
|
35.0
|
1.0
|
C5
|
D:KMU502
|
4.0
|
22.5
|
1.0
|
O27
|
D:KMU502
|
4.0
|
26.7
|
1.0
|
CG2
|
D:ILE271
|
4.0
|
35.4
|
1.0
|
C3
|
D:KMU502
|
4.0
|
23.2
|
1.0
|
CA
|
D:ILE271
|
4.2
|
35.0
|
1.0
|
CE1
|
D:PHE275
|
4.3
|
36.4
|
1.0
|
C21
|
D:KMU502
|
4.3
|
24.7
|
1.0
|
CG2
|
D:THR395
|
4.4
|
23.2
|
1.0
|
CE
|
D:LYS274
|
4.5
|
44.2
|
1.0
|
C4
|
D:KMU502
|
4.5
|
22.6
|
1.0
|
O
|
D:ILE271
|
4.5
|
35.2
|
1.0
|
CD1
|
D:PHE275
|
4.7
|
36.3
|
1.0
|
CB
|
D:VAL415
|
4.8
|
20.6
|
1.0
|
NZ
|
D:LYS274
|
4.8
|
45.6
|
1.0
|
C23
|
D:KMU502
|
4.9
|
24.6
|
1.0
|
C
|
D:ILE271
|
4.9
|
35.9
|
1.0
|
C22
|
D:KMU502
|
5.0
|
24.6
|
1.0
|
|
Reference:
P.Furet,
V.Bordas,
M.Le Douget,
B.Salem,
Y.Mesrouze,
P.Imbach-Weese,
H.Sellner,
M.Voegtle,
N.Soldermann,
E.Chapeau,
M.Wartmann,
C.Scheufler,
C.Fernandez,
J.Kallen,
V.Guagnano,
P.Chene,
T.Schmelzle.
The First Class of Small Molecules Potently Disrupting the Yap-Tead Interaction By Direct Competition. Chemmedchem V. 17 00303 2022.
ISSN: ESSN 1860-7187
PubMed: 35950546
DOI: 10.1002/CMDC.202200303
Page generated: Tue Jul 30 06:24:16 2024
|