Chlorine in PDB 8ahz: Native Vird of Streptomyces Virginiae

The structure of Native Vird of Streptomyces Virginiae, PDB code: 8ahz was solved by S.Collin, A.Gruez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.78 / 1.70
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	84.31, 84.31, 230.19, 90, 90, 90
R / Rfree (%)	15.9 / 18

The binding sites of Chlorine atom in the Native Vird of Streptomyces Virginiae (pdb code 8ahz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Native Vird of Streptomyces Virginiae, PDB code: 8ahz:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Native Vird of Streptomyces Virginiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Native Vird of Streptomyces Virginiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl317 b:28.6 occ:1.00 O A:HOH407 3.1 38.2 1.0 N A:MSE137 3.3 22.5 1.0 C A:PRO135 3.3 21.7 1.0 N A:ALA138 3.4 21.1 1.0 CA A:PRO135 3.5 22.3 1.0 N A:ALA136 3.6 21.0 1.0 CB A:MSE137 3.6 22.0 1.0 O A:PRO135 3.7 20.9 1.0 CA A:MSE137 3.8 21.2 1.0 C A:MSE137 4.0 21.6 1.0 CB A:PRO135 4.1 22.7 1.0 N3 A:IMD316 4.1 63.6 1.0 CB A:ALA138 4.1 20.4 1.0 C A:ALA136 4.2 21.2 1.0 CE2 A:TYR80 4.2 21.5 1.0 CE A:MSE137 4.3 27.7 1.0 CD2 A:LEU223 4.4 38.1 1.0 CA A:ALA138 4.4 20.5 1.0 CG A:MSE137 4.4 23.9 1.0 CA A:ALA136 4.5 21.9 1.0 C2 A:IMD316 4.6 65.2 1.0 OE2 A:GLU128 4.6 30.1 1.0 C4 A:IMD316 4.7 68.8 1.0 O A:VAL134 4.7 25.4 1.0 N A:PRO135 4.8 23.1 1.0 CD2 A:TYR80 4.8 21.7 1.0 CZ A:TYR80 5.0 21.5 1.0

Chlorine binding site 2 out of 3 in the Native Vird of Streptomyces Virginiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Native Vird of Streptomyces Virginiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl312 b:33.1 occ:1.00 CD1 B:LEU223 3.2 39.8 0.0 N B:MSE137 3.3 21.4 1.0 C B:PRO135 3.3 21.5 1.0 N B:ALA138 3.4 20.7 1.0 CA B:PRO135 3.4 21.7 1.0 O2 B:EDO307 3.5 67.7 1.0 N B:ALA136 3.6 21.6 1.0 CB B:MSE137 3.6 23.1 1.0 CD2 B:LEU223 3.7 36.0 0.0 O B:PRO135 3.7 21.4 1.0 CA B:MSE137 3.8 21.7 1.0 C2 B:EDO307 3.8 60.7 1.0 CG B:LEU223 4.0 42.1 1.0 CB B:PRO135 4.0 21.9 1.0 C B:MSE137 4.0 21.3 1.0 CB B:ALA138 4.1 21.4 1.0 C B:ALA136 4.2 21.2 1.0 CE B:MSE137 4.3 27.5 1.0 CA B:ALA138 4.3 20.9 1.0 CE2 B:TYR80 4.4 21.6 1.0 CG B:MSE137 4.4 24.4 1.0 CA B:ALA136 4.5 21.3 1.0 OE2 B:GLU128 4.6 31.6 1.0 O B:VAL134 4.7 23.3 1.0 N B:PRO135 4.7 21.3 1.0 C1 B:EDO307 4.9 60.2 1.0 CD2 B:TYR80 4.9 22.5 1.0

Chlorine binding site 3 out of 3 in the Native Vird of Streptomyces Virginiae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Native Vird of Streptomyces Virginiae within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl311 b:28.8 occ:1.00 O C:HOH403 3.1 40.4 1.0 N C:MSE137 3.3 21.4 1.0 C C:PRO135 3.4 21.6 1.0 N C:ALA138 3.4 21.7 1.0 CA C:PRO135 3.5 22.0 1.0 N C:ALA136 3.6 21.9 1.0 CB C:MSE137 3.7 23.5 1.0 O C:PRO135 3.7 20.8 1.0 CA C:MSE137 3.8 22.3 1.0 O C:HOH522 4.0 50.5 1.0 CB C:PRO135 4.0 21.9 1.0 C C:MSE137 4.0 21.9 1.0 CB C:ALA138 4.1 21.5 1.0 C C:ALA136 4.3 21.4 1.0 CE C:MSE137 4.3 27.7 1.0 CE2 C:TYR80 4.3 23.0 1.0 CA C:ALA138 4.4 21.2 1.0 CD1 C:LEU223 4.4 38.2 1.0 CG C:MSE137 4.4 24.4 1.0 CA C:ALA136 4.6 22.6 1.0 OE2 C:GLU128 4.7 33.1 1.0 CD2 C:LEU223 4.8 42.1 1.0 O C:VAL134 4.8 23.6 1.0 N C:PRO135 4.8 22.2 1.0 CD2 C:TYR80 4.9 23.8 1.0

S.Collin, A.Gruez. Decrypting the Programming of Beta-Methylation in Virginiamycin M Biosynthesis Nat Commun 2023.
ISSN: ESSN 2041-1723