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Chlorine in PDB 8au8: Xenobiotic Reductase A From P. Putida in Complex with Ethyl (Z)-2- (Hydroxyimino)-3-Oxopentanoate

Protein crystallography data

The structure of Xenobiotic Reductase A From P. Putida in Complex with Ethyl (Z)-2- (Hydroxyimino)-3-Oxopentanoate, PDB code: 8au8 was solved by N.Polidori, K.Gruber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.52 / 1.58
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.165, 157.966, 57.614, 90, 90, 90
R / Rfree (%) 16.4 / 18.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Xenobiotic Reductase A From P. Putida in Complex with Ethyl (Z)-2- (Hydroxyimino)-3-Oxopentanoate (pdb code 8au8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Xenobiotic Reductase A From P. Putida in Complex with Ethyl (Z)-2- (Hydroxyimino)-3-Oxopentanoate, PDB code: 8au8:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8au8

Go back to Chlorine Binding Sites List in 8au8
Chlorine binding site 1 out of 2 in the Xenobiotic Reductase A From P. Putida in Complex with Ethyl (Z)-2- (Hydroxyimino)-3-Oxopentanoate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Xenobiotic Reductase A From P. Putida in Complex with Ethyl (Z)-2- (Hydroxyimino)-3-Oxopentanoate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:28.9
occ:1.00
O A:HOH641 2.9 24.2 1.0
O A:HOH695 3.0 18.6 1.0
O A:HOH737 3.1 18.6 1.0
NH2 A:ARG47 3.2 14.8 1.0
CM A:MPD408 3.6 36.5 1.0
CB A:ALA88 3.6 14.5 1.0
C3 A:MPD408 3.9 30.7 1.0
CA A:ALA88 3.9 15.6 1.0
CB B:ASP36 3.9 16.6 1.0
CZ A:ARG47 4.3 13.2 1.0
O B:ASP36 4.3 15.7 1.0
C2 A:MPD408 4.4 38.8 1.0
O A:HOH666 4.5 27.6 1.0
NE A:ARG47 4.5 13.8 1.0
CG2 B:VAL40 4.6 14.9 1.0
O A:ALA88 4.6 17.6 1.0
C B:ASP36 4.6 16.1 1.0
CB A:ALA43 4.7 16.1 1.0
CG B:ASP36 4.7 22.6 1.0
C A:ALA88 4.8 18.2 1.0
OD2 B:ASP36 4.8 31.3 1.0
CB A:ALA91 4.9 18.1 1.0
CA B:ASP36 4.9 17.6 1.0
N A:ALA88 4.9 16.5 1.0
O B:HOH732 5.0 35.9 1.0

Chlorine binding site 2 out of 2 in 8au8

Go back to Chlorine Binding Sites List in 8au8
Chlorine binding site 2 out of 2 in the Xenobiotic Reductase A From P. Putida in Complex with Ethyl (Z)-2- (Hydroxyimino)-3-Oxopentanoate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Xenobiotic Reductase A From P. Putida in Complex with Ethyl (Z)-2- (Hydroxyimino)-3-Oxopentanoate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:26.1
occ:1.00
O B:HOH687 2.9 24.4 1.0
O B:HOH689 3.1 25.3 1.0
ND2 B:ASN17 3.1 15.8 1.0
O B:HOH665 3.1 37.6 1.0
CD1 B:PHE5 3.9 18.1 1.0
CG B:ARG16 3.9 17.9 1.0
CD B:ARG16 4.1 18.8 1.0
CG B:ASN17 4.1 16.8 1.0
O B:ARG16 4.1 18.5 1.0
CB B:ASN17 4.2 13.6 1.0
CE1 B:PHE5 4.2 16.9 1.0
O B:HOH770 4.3 43.5 1.0
O B:GLY49 4.3 14.4 1.0
CB B:ARG16 4.5 17.2 1.0
O B:HOH844 4.5 35.3 1.0
NE B:ARG16 4.6 19.2 1.0
CG2 B:THR350 4.6 16.1 1.0
C B:ARG16 4.6 18.5 1.0
OG1 B:THR350 4.9 21.3 1.0
CA B:THR350 4.9 17.0 1.0

Reference:

W.B.Breukelaar, N.Polidori, A.Singh, B.Daniel, S.M.Glueck, K.Gruber, W.Kroutil. Mechanistic Insights Into the Ene-Reductase-Catalyzed Promiscuous Reduction of Oximes to Amines Acs Catalysis 2023.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.2C06137
Page generated: Tue Jul 30 06:52:03 2024

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