Chlorine in PDB 8b6i: KRASG12C Ligand Complex
Protein crystallography data
The structure of KRASG12C Ligand Complex, PDB code: 8b6i
was solved by
C.Phillips,
J.Breed,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
21.73 /
1.70
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
33.65,
39.19,
65.59,
95.63,
95.18,
103.25
|
R / Rfree (%)
|
19.6 /
24.1
|
Other elements in 8b6i:
The structure of KRASG12C Ligand Complex also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the KRASG12C Ligand Complex
(pdb code 8b6i). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
KRASG12C Ligand Complex, PDB code: 8b6i:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 8b6i
Go back to
Chlorine Binding Sites List in 8b6i
Chlorine binding site 1 out
of 2 in the KRASG12C Ligand Complex
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of KRASG12C Ligand Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl203
b:19.3
occ:1.00
|
CL
|
A:PQI203
|
0.0
|
19.3
|
1.0
|
C10
|
A:PQI203
|
1.7
|
18.8
|
1.0
|
C11
|
A:PQI203
|
2.7
|
19.8
|
1.0
|
C9
|
A:PQI203
|
2.7
|
18.6
|
1.0
|
O1
|
A:PQI203
|
2.9
|
18.2
|
1.0
|
C15
|
A:PQI203
|
3.1
|
18.6
|
1.0
|
C16
|
A:PQI203
|
3.4
|
15.9
|
1.0
|
C22
|
A:PQI203
|
3.4
|
16.9
|
1.0
|
SD
|
A:MET72
|
3.7
|
19.1
|
1.0
|
CE
|
A:MET72
|
3.8
|
22.1
|
1.0
|
C8
|
A:PQI203
|
4.0
|
20.7
|
1.0
|
CD
|
A:ARG68
|
4.0
|
26.6
|
1.0
|
C6
|
A:PQI203
|
4.0
|
23.5
|
1.0
|
CG2
|
A:THR58
|
4.0
|
14.8
|
1.0
|
C20
|
A:PQI203
|
4.0
|
18.0
|
1.0
|
CG1
|
A:VAL9
|
4.2
|
16.8
|
1.0
|
C12
|
A:PQI203
|
4.2
|
17.8
|
1.0
|
NH1
|
A:ARG68
|
4.2
|
26.2
|
1.0
|
CB
|
A:THR58
|
4.3
|
14.4
|
1.0
|
CG
|
A:MET72
|
4.3
|
18.7
|
1.0
|
NE
|
A:ARG68
|
4.3
|
23.8
|
1.0
|
CG
|
A:ARG68
|
4.4
|
26.5
|
1.0
|
C17
|
A:PQI203
|
4.4
|
15.8
|
1.0
|
CZ
|
A:ARG68
|
4.4
|
29.4
|
1.0
|
C7
|
A:PQI203
|
4.5
|
23.2
|
1.0
|
OG1
|
A:THR58
|
4.5
|
13.5
|
1.0
|
C21
|
A:PQI203
|
4.8
|
20.7
|
1.0
|
CB
|
A:VAL9
|
4.8
|
13.7
|
1.0
|
C19
|
A:PQI203
|
4.9
|
18.2
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 8b6i
Go back to
Chlorine Binding Sites List in 8b6i
Chlorine binding site 2 out
of 2 in the KRASG12C Ligand Complex
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of KRASG12C Ligand Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl203
b:21.4
occ:1.00
|
CL
|
B:PQI203
|
0.0
|
21.4
|
1.0
|
C10
|
B:PQI203
|
1.7
|
21.7
|
1.0
|
C11
|
B:PQI203
|
2.7
|
22.7
|
1.0
|
C9
|
B:PQI203
|
2.7
|
25.2
|
1.0
|
O1
|
B:PQI203
|
2.9
|
21.2
|
1.0
|
C15
|
B:PQI203
|
3.1
|
21.7
|
1.0
|
C16
|
B:PQI203
|
3.3
|
18.4
|
1.0
|
C22
|
B:PQI203
|
3.5
|
19.9
|
1.0
|
SD
|
B:MET72
|
3.5
|
22.0
|
1.0
|
CG1
|
B:VAL9
|
3.9
|
16.3
|
1.0
|
CG2
|
B:THR58
|
4.0
|
15.8
|
1.0
|
C8
|
B:PQI203
|
4.0
|
26.2
|
1.0
|
C6
|
B:PQI203
|
4.0
|
26.9
|
1.0
|
C20
|
B:PQI203
|
4.0
|
22.7
|
1.0
|
CD
|
B:ARG68
|
4.1
|
35.0
|
1.0
|
CE
|
B:MET72
|
4.1
|
31.1
|
1.0
|
CG
|
B:MET72
|
4.1
|
24.1
|
1.0
|
CG
|
B:ARG68
|
4.2
|
33.0
|
1.0
|
C12
|
B:PQI203
|
4.2
|
18.2
|
1.0
|
C17
|
B:PQI203
|
4.3
|
19.0
|
1.0
|
CB
|
B:THR58
|
4.3
|
16.8
|
1.0
|
NE
|
B:ARG68
|
4.5
|
29.8
|
1.0
|
C7
|
B:PQI203
|
4.5
|
28.7
|
1.0
|
NH1
|
B:ARG68
|
4.5
|
34.0
|
1.0
|
OG1
|
B:THR58
|
4.6
|
15.5
|
1.0
|
CZ
|
B:ARG68
|
4.7
|
35.5
|
1.0
|
C21
|
B:PQI203
|
4.8
|
22.7
|
1.0
|
CB
|
B:VAL9
|
4.9
|
14.6
|
1.0
|
C19
|
B:PQI203
|
4.9
|
21.3
|
1.0
|
C18
|
B:PQI203
|
5.0
|
18.5
|
1.0
|
|
Reference:
J.G.Kettle,
C.Phillips,
J.Breed.
N/A N/A.
Page generated: Tue Jul 30 07:01:18 2024
|