Chlorine in PDB 8b6r: X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Labeled with A Chloroalkane CYANINE3 Fluorophore Substrate

Enzymatic activity of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Labeled with A Chloroalkane CYANINE3 Fluorophore Substrate

All present enzymatic activity of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Labeled with A Chloroalkane CYANINE3 Fluorophore Substrate:
3.8.1.5;

Protein crystallography data

The structure of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Labeled with A Chloroalkane CYANINE3 Fluorophore Substrate, PDB code: 8b6r was solved by M.Tarnawski, L.Hellweg, J.Hiblot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.25 / 1.50
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 112.56, 112.56, 44.33, 90, 90, 90
R / Rfree (%) 16.2 / 19.2

Other elements in 8b6r:

The structure of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Labeled with A Chloroalkane CYANINE3 Fluorophore Substrate also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Labeled with A Chloroalkane CYANINE3 Fluorophore Substrate (pdb code 8b6r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Labeled with A Chloroalkane CYANINE3 Fluorophore Substrate, PDB code: 8b6r:

Chlorine binding site 1 out of 1 in 8b6r

Go back to Chlorine Binding Sites List in 8b6r
Chlorine binding site 1 out of 1 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Labeled with A Chloroalkane CYANINE3 Fluorophore Substrate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Labeled with A Chloroalkane CYANINE3 Fluorophore Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:10.5
occ:1.00
 NE1 A:TRP107 3.2 10.2 1.0
ND2 A:ASN41 3.3 9.7 1.0
N A:PRO206 3.6 10.2 1.0
CA A:PRO206 3.6 10.7 1.0
CD1 A:TRP107 3.8 10.2 1.0
CZ A:PHE168 3.8 12.6 1.0
C10 A:PJI301 3.8 12.2 1.0
CD A:PRO206 3.8 10.5 1.0
C A:PHE205 3.8 9.0 1.0
CB A:PHE205 3.9 10.0 1.0
CD1 A:LEU209 3.9 11.1 1.0
CB A:PRO206 3.9 11.5 1.0
CB A:ASN41 3.9 10.6 1.0
CG A:LEU209 4.0 10.6 1.0
O A:PHE205 4.1 10.3 1.0
C9 A:PJI301 4.1 11.8 1.0
CG A:ASN41 4.1 9.2 1.0
CD2 A:LEU209 4.2 12.7 1.0
CE2 A:PHE168 4.3 13.9 1.0
C8 A:PJI301 4.4 12.6 1.0
CG A:PRO206 4.4 10.5 1.0
CE2 A:TRP107 4.5 10.0 1.0
CE2 A:PHE149 4.5 11.1 1.0
CA A:PHE205 4.5 9.4 1.0
CE1 A:PHE168 4.7 11.8 1.0
OD1 A:ASP106 4.8 10.3 1.0
CG A:PHE205 4.9 10.1 1.0

Reference:

L.Hellweg, A.Edenhofer, L.Barck, M.C.Huppertz, M.S.Frei, M.Tarnawski, A.Bergner, B.Koch, K.Johnsson, J.Hiblot. A General Method For the Development of Multicolor Biosensors with Large Dynamic Ranges. Nat.Chem.Biol. 2023.
ISSN: ESSN 1552-4469
PubMed: 37291200
DOI: 10.1038/S41589-023-01350-1
Page generated: Tue Jul 30 07:02:00 2024

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