Chlorine in PDB 8brz: Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary

Protein crystallography data

The structure of Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 8brz was solved by J.Lieske, S.Saouane, M.Assmann, H.Zaun, J.Kuballa, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.28 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.41, 94.08, 81.71, 90, 102.63, 90
R / Rfree (%) 15.8 / 18.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary (pdb code 8brz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 8brz:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8brz

Go back to Chlorine Binding Sites List in 8brz
Chlorine binding site 1 out of 2 in the Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:13.0
occ:1.00
H A:HIS378 2.5 12.8 1.0
H A:GLY375 2.5 12.8 1.0
HD2 A:HIS378 2.6 13.3 1.0
HB3 A:PHE377 2.8 14.0 1.0
HE1 A:TRP309 2.9 13.0 1.0
HZ2 A:TRP309 3.1 15.1 1.0
O A:HOH679 3.1 11.1 1.0
O A:HOH619 3.1 17.2 1.0
HA A:LYS374 3.2 14.8 1.0
HB2 A:HIS378 3.2 14.4 1.0
H A:PHE377 3.3 14.1 1.0
O A:GLY375 3.3 12.1 1.0
N A:HIS378 3.3 10.6 1.0
N A:GLY375 3.3 10.7 1.0
CD2 A:HIS378 3.4 11.1 1.0
NE1 A:TRP309 3.6 10.8 1.0
CB A:PHE377 3.7 11.7 1.0
HG3 A:LYS374 3.7 13.4 1.0
CZ2 A:TRP309 3.8 12.5 1.0
N A:PHE377 3.9 11.7 1.0
C A:GLY375 3.9 12.7 1.0
CB A:HIS378 3.9 12.0 1.0
HD2 A:PHE377 4.0 18.9 1.0
HH11 A:ARG63 4.0 30.9 1.0
CG A:HIS378 4.0 14.7 1.0
CA A:LYS374 4.0 12.3 1.0
HB2 A:PHE377 4.0 14.0 1.0
CE2 A:TRP309 4.1 10.8 1.0
O A:PHE373 4.1 16.4 1.0
CA A:PHE377 4.1 14.0 1.0
CA A:GLY375 4.2 13.4 1.0
C A:PHE377 4.2 13.4 1.0
C A:LYS374 4.2 13.3 1.0
CA A:HIS378 4.2 9.5 1.0
HH12 A:ARG63 4.2 30.9 1.0
H A:LEU379 4.4 12.3 1.0
NH1 A:ARG63 4.4 25.8 1.0
HA3 A:GLY375 4.5 16.1 1.0
CG A:LYS374 4.5 11.2 1.0
HG2 A:LYS374 4.6 13.4 1.0
NE2 A:HIS378 4.6 13.6 1.0
CD2 A:PHE377 4.7 15.8 1.0
O A:HOH665 4.7 12.1 1.0
CG A:PHE377 4.7 11.6 1.0
HB3 A:HIS378 4.8 14.4 1.0
HB3 A:TRP310 4.8 12.0 1.0
CB A:LYS374 4.8 11.8 1.0
CD1 A:TRP309 4.9 9.0 1.0
HA A:HIS378 4.9 11.4 1.0
N A:PRO376 4.9 12.9 1.0
HD3 A:ARG63 4.9 19.3 1.0
C A:PRO376 4.9 11.5 1.0
C A:PHE373 5.0 14.3 1.0
HA2 A:GLY375 5.0 16.1 1.0

Chlorine binding site 2 out of 2 in 8brz

Go back to Chlorine Binding Sites List in 8brz
Chlorine binding site 2 out of 2 in the Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:17.1
occ:1.00
H B:HIS378 2.5 19.3 1.0
H B:GLY375 2.5 20.4 1.0
HD2 B:HIS378 2.7 19.6 1.0
HE1 B:TRP309 2.8 19.1 1.0
HB3 B:PHE377 2.8 19.9 1.0
HZ2 B:TRP309 3.1 20.1 1.0
O B:HOH713 3.1 15.4 1.0
O B:HOH628 3.1 22.1 1.0
HA B:LYS374 3.2 14.9 1.0
HB2 B:HIS378 3.2 18.6 1.0
H B:PHE377 3.3 19.5 1.0
N B:HIS378 3.3 16.1 1.0
O B:GLY375 3.4 16.2 1.0
N B:GLY375 3.4 17.0 1.0
CD2 B:HIS378 3.5 16.4 1.0
NE1 B:TRP309 3.5 15.9 1.0
HG3 B:LYS374 3.7 16.1 1.0
CB B:PHE377 3.7 16.6 1.0
CZ2 B:TRP309 3.8 16.7 1.0
N B:PHE377 3.9 16.3 1.0
CB B:HIS378 3.9 15.5 1.0
C B:GLY375 4.0 14.3 1.0
HD2 B:PHE377 4.0 24.2 1.0
CG B:HIS378 4.0 17.1 1.0
CE2 B:TRP309 4.0 15.2 1.0
CA B:LYS374 4.0 12.5 1.0
O B:PHE373 4.1 17.9 1.0
HB2 B:PHE377 4.1 19.9 1.0
HH11 B:ARG63 4.1 31.9 1.0
CA B:PHE377 4.1 19.1 1.0
C B:PHE377 4.2 15.0 1.0
C B:LYS374 4.2 15.7 1.0
CA B:HIS378 4.2 13.1 1.0
CA B:GLY375 4.2 14.7 1.0
HH12 B:ARG63 4.3 31.9 1.0
H B:LEU379 4.4 15.6 1.0
NH1 B:ARG63 4.4 26.6 1.0
CG B:LYS374 4.5 13.4 1.0
HA3 B:GLY375 4.6 17.7 1.0
NE2 B:HIS378 4.7 17.5 1.0
O B:HOH651 4.7 16.2 1.0
CD2 B:PHE377 4.7 20.2 1.0
HG2 B:LYS374 4.7 16.1 1.0
CG B:PHE377 4.7 14.8 1.0
HB3 B:HIS378 4.8 18.6 1.0
CD1 B:TRP309 4.8 15.1 1.0
HB3 B:TRP310 4.8 16.2 1.0
CB B:LYS374 4.8 16.2 1.0
HA B:HIS378 4.9 15.7 1.0
HD3 B:ARG63 4.9 20.8 1.0
HE2 B:HIS378 4.9 21.0 1.0
C B:PHE373 5.0 16.7 1.0
N B:PRO376 5.0 16.5 1.0
C B:PRO376 5.0 16.9 1.0

Reference:

J.Lieske, S.Saouane, S.Guenther, P.Y.A.Reinke, S.Falke, W.Ewert, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.Assmann, H.Zaun, J.Kuballa, H.N.Chapman, A.Meents. High-Pressure Macromolecular Crystallography to Explore the Conformational Space of Proteins To Be Published.
Page generated: Tue Jul 30 07:23:13 2024

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