Chlorine in PDB 8brz: Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary
Protein crystallography data
The structure of Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 8brz
was solved by
J.Lieske,
S.Saouane,
M.Assmann,
H.Zaun,
J.Kuballa,
A.Meents,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
41.28 /
1.70
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.41,
94.08,
81.71,
90,
102.63,
90
|
R / Rfree (%)
|
15.8 /
18.3
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary
(pdb code 8brz). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 8brz:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 8brz
Go back to
Chlorine Binding Sites List in 8brz
Chlorine binding site 1 out
of 2 in the Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl501
b:13.0
occ:1.00
|
H
|
A:HIS378
|
2.5
|
12.8
|
1.0
|
H
|
A:GLY375
|
2.5
|
12.8
|
1.0
|
HD2
|
A:HIS378
|
2.6
|
13.3
|
1.0
|
HB3
|
A:PHE377
|
2.8
|
14.0
|
1.0
|
HE1
|
A:TRP309
|
2.9
|
13.0
|
1.0
|
HZ2
|
A:TRP309
|
3.1
|
15.1
|
1.0
|
O
|
A:HOH679
|
3.1
|
11.1
|
1.0
|
O
|
A:HOH619
|
3.1
|
17.2
|
1.0
|
HA
|
A:LYS374
|
3.2
|
14.8
|
1.0
|
HB2
|
A:HIS378
|
3.2
|
14.4
|
1.0
|
H
|
A:PHE377
|
3.3
|
14.1
|
1.0
|
O
|
A:GLY375
|
3.3
|
12.1
|
1.0
|
N
|
A:HIS378
|
3.3
|
10.6
|
1.0
|
N
|
A:GLY375
|
3.3
|
10.7
|
1.0
|
CD2
|
A:HIS378
|
3.4
|
11.1
|
1.0
|
NE1
|
A:TRP309
|
3.6
|
10.8
|
1.0
|
CB
|
A:PHE377
|
3.7
|
11.7
|
1.0
|
HG3
|
A:LYS374
|
3.7
|
13.4
|
1.0
|
CZ2
|
A:TRP309
|
3.8
|
12.5
|
1.0
|
N
|
A:PHE377
|
3.9
|
11.7
|
1.0
|
C
|
A:GLY375
|
3.9
|
12.7
|
1.0
|
CB
|
A:HIS378
|
3.9
|
12.0
|
1.0
|
HD2
|
A:PHE377
|
4.0
|
18.9
|
1.0
|
HH11
|
A:ARG63
|
4.0
|
30.9
|
1.0
|
CG
|
A:HIS378
|
4.0
|
14.7
|
1.0
|
CA
|
A:LYS374
|
4.0
|
12.3
|
1.0
|
HB2
|
A:PHE377
|
4.0
|
14.0
|
1.0
|
CE2
|
A:TRP309
|
4.1
|
10.8
|
1.0
|
O
|
A:PHE373
|
4.1
|
16.4
|
1.0
|
CA
|
A:PHE377
|
4.1
|
14.0
|
1.0
|
CA
|
A:GLY375
|
4.2
|
13.4
|
1.0
|
C
|
A:PHE377
|
4.2
|
13.4
|
1.0
|
C
|
A:LYS374
|
4.2
|
13.3
|
1.0
|
CA
|
A:HIS378
|
4.2
|
9.5
|
1.0
|
HH12
|
A:ARG63
|
4.2
|
30.9
|
1.0
|
H
|
A:LEU379
|
4.4
|
12.3
|
1.0
|
NH1
|
A:ARG63
|
4.4
|
25.8
|
1.0
|
HA3
|
A:GLY375
|
4.5
|
16.1
|
1.0
|
CG
|
A:LYS374
|
4.5
|
11.2
|
1.0
|
HG2
|
A:LYS374
|
4.6
|
13.4
|
1.0
|
NE2
|
A:HIS378
|
4.6
|
13.6
|
1.0
|
CD2
|
A:PHE377
|
4.7
|
15.8
|
1.0
|
O
|
A:HOH665
|
4.7
|
12.1
|
1.0
|
CG
|
A:PHE377
|
4.7
|
11.6
|
1.0
|
HB3
|
A:HIS378
|
4.8
|
14.4
|
1.0
|
HB3
|
A:TRP310
|
4.8
|
12.0
|
1.0
|
CB
|
A:LYS374
|
4.8
|
11.8
|
1.0
|
CD1
|
A:TRP309
|
4.9
|
9.0
|
1.0
|
HA
|
A:HIS378
|
4.9
|
11.4
|
1.0
|
N
|
A:PRO376
|
4.9
|
12.9
|
1.0
|
HD3
|
A:ARG63
|
4.9
|
19.3
|
1.0
|
C
|
A:PRO376
|
4.9
|
11.5
|
1.0
|
C
|
A:PHE373
|
5.0
|
14.3
|
1.0
|
HA2
|
A:GLY375
|
5.0
|
16.1
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 8brz
Go back to
Chlorine Binding Sites List in 8brz
Chlorine binding site 2 out
of 2 in the Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 52 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl501
b:17.1
occ:1.00
|
H
|
B:HIS378
|
2.5
|
19.3
|
1.0
|
H
|
B:GLY375
|
2.5
|
20.4
|
1.0
|
HD2
|
B:HIS378
|
2.7
|
19.6
|
1.0
|
HE1
|
B:TRP309
|
2.8
|
19.1
|
1.0
|
HB3
|
B:PHE377
|
2.8
|
19.9
|
1.0
|
HZ2
|
B:TRP309
|
3.1
|
20.1
|
1.0
|
O
|
B:HOH713
|
3.1
|
15.4
|
1.0
|
O
|
B:HOH628
|
3.1
|
22.1
|
1.0
|
HA
|
B:LYS374
|
3.2
|
14.9
|
1.0
|
HB2
|
B:HIS378
|
3.2
|
18.6
|
1.0
|
H
|
B:PHE377
|
3.3
|
19.5
|
1.0
|
N
|
B:HIS378
|
3.3
|
16.1
|
1.0
|
O
|
B:GLY375
|
3.4
|
16.2
|
1.0
|
N
|
B:GLY375
|
3.4
|
17.0
|
1.0
|
CD2
|
B:HIS378
|
3.5
|
16.4
|
1.0
|
NE1
|
B:TRP309
|
3.5
|
15.9
|
1.0
|
HG3
|
B:LYS374
|
3.7
|
16.1
|
1.0
|
CB
|
B:PHE377
|
3.7
|
16.6
|
1.0
|
CZ2
|
B:TRP309
|
3.8
|
16.7
|
1.0
|
N
|
B:PHE377
|
3.9
|
16.3
|
1.0
|
CB
|
B:HIS378
|
3.9
|
15.5
|
1.0
|
C
|
B:GLY375
|
4.0
|
14.3
|
1.0
|
HD2
|
B:PHE377
|
4.0
|
24.2
|
1.0
|
CG
|
B:HIS378
|
4.0
|
17.1
|
1.0
|
CE2
|
B:TRP309
|
4.0
|
15.2
|
1.0
|
CA
|
B:LYS374
|
4.0
|
12.5
|
1.0
|
O
|
B:PHE373
|
4.1
|
17.9
|
1.0
|
HB2
|
B:PHE377
|
4.1
|
19.9
|
1.0
|
HH11
|
B:ARG63
|
4.1
|
31.9
|
1.0
|
CA
|
B:PHE377
|
4.1
|
19.1
|
1.0
|
C
|
B:PHE377
|
4.2
|
15.0
|
1.0
|
C
|
B:LYS374
|
4.2
|
15.7
|
1.0
|
CA
|
B:HIS378
|
4.2
|
13.1
|
1.0
|
CA
|
B:GLY375
|
4.2
|
14.7
|
1.0
|
HH12
|
B:ARG63
|
4.3
|
31.9
|
1.0
|
H
|
B:LEU379
|
4.4
|
15.6
|
1.0
|
NH1
|
B:ARG63
|
4.4
|
26.6
|
1.0
|
CG
|
B:LYS374
|
4.5
|
13.4
|
1.0
|
HA3
|
B:GLY375
|
4.6
|
17.7
|
1.0
|
NE2
|
B:HIS378
|
4.7
|
17.5
|
1.0
|
O
|
B:HOH651
|
4.7
|
16.2
|
1.0
|
CD2
|
B:PHE377
|
4.7
|
20.2
|
1.0
|
HG2
|
B:LYS374
|
4.7
|
16.1
|
1.0
|
CG
|
B:PHE377
|
4.7
|
14.8
|
1.0
|
HB3
|
B:HIS378
|
4.8
|
18.6
|
1.0
|
CD1
|
B:TRP309
|
4.8
|
15.1
|
1.0
|
HB3
|
B:TRP310
|
4.8
|
16.2
|
1.0
|
CB
|
B:LYS374
|
4.8
|
16.2
|
1.0
|
HA
|
B:HIS378
|
4.9
|
15.7
|
1.0
|
HD3
|
B:ARG63
|
4.9
|
20.8
|
1.0
|
HE2
|
B:HIS378
|
4.9
|
21.0
|
1.0
|
C
|
B:PHE373
|
5.0
|
16.7
|
1.0
|
N
|
B:PRO376
|
5.0
|
16.5
|
1.0
|
C
|
B:PRO376
|
5.0
|
16.9
|
1.0
|
|
Reference:
J.Lieske,
S.Saouane,
S.Guenther,
P.Y.A.Reinke,
S.Falke,
W.Ewert,
J.Meyer,
T.Pakendorf,
B.Reime,
A.Burkhardt,
E.Crosas,
J.Hakanpaeae,
K.Stachnik,
J.Sieg,
M.Rarey,
M.Assmann,
H.Zaun,
J.Kuballa,
H.N.Chapman,
A.Meents.
High-Pressure Macromolecular Crystallography to Explore the Conformational Space of Proteins To Be Published.
Page generated: Tue Jul 30 07:23:13 2024
|