Chlorine in PDB 8bs0: Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 80 Mpa Helium Gas Pressure in A Sapphire Capillary
Protein crystallography data
The structure of Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 80 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 8bs0
was solved by
J.Lieske,
S.Saouane,
M.Assmann,
H.Zaun,
J.Kuballa,
A.Meents,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.79 /
1.70
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.35,
93.98,
81.52,
90,
102.55,
90
|
R / Rfree (%)
|
15.6 /
18.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 80 Mpa Helium Gas Pressure in A Sapphire Capillary
(pdb code 8bs0). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 80 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 8bs0:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 8bs0
Go back to
Chlorine Binding Sites List in 8bs0
Chlorine binding site 1 out
of 2 in the Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 80 Mpa Helium Gas Pressure in A Sapphire Capillary
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 80 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:15.0
occ:1.00
|
H
|
A:HIS378
|
2.4
|
19.4
|
1.0
|
H
|
A:GLY375
|
2.5
|
16.8
|
1.0
|
HD2
|
A:HIS378
|
2.7
|
20.3
|
1.0
|
HB3
|
A:PHE377
|
2.7
|
17.9
|
1.0
|
HE1
|
A:TRP309
|
2.9
|
19.4
|
1.0
|
HZ2
|
A:TRP309
|
3.1
|
17.1
|
1.0
|
O
|
A:HOH658
|
3.1
|
15.2
|
1.0
|
O
|
A:HOH676
|
3.2
|
20.6
|
1.0
|
HA
|
A:LYS374
|
3.2
|
15.4
|
1.0
|
H
|
A:PHE377
|
3.2
|
16.1
|
1.0
|
O
|
A:GLY375
|
3.3
|
16.5
|
1.0
|
HB2
|
A:HIS378
|
3.3
|
16.7
|
1.0
|
N
|
A:HIS378
|
3.3
|
16.2
|
1.0
|
N
|
A:GLY375
|
3.4
|
14.0
|
1.0
|
CD2
|
A:HIS378
|
3.5
|
16.9
|
1.0
|
CB
|
A:PHE377
|
3.6
|
14.9
|
1.0
|
NE1
|
A:TRP309
|
3.6
|
16.1
|
1.0
|
HG3
|
A:LYS374
|
3.7
|
18.0
|
1.0
|
N
|
A:PHE377
|
3.8
|
13.4
|
1.0
|
CZ2
|
A:TRP309
|
3.8
|
14.2
|
1.0
|
C
|
A:GLY375
|
3.9
|
18.3
|
1.0
|
CB
|
A:HIS378
|
3.9
|
13.9
|
1.0
|
HD2
|
A:PHE377
|
4.0
|
20.2
|
1.0
|
HB2
|
A:PHE377
|
4.0
|
17.9
|
1.0
|
HH11
|
A:ARG63
|
4.0
|
33.1
|
1.0
|
CG
|
A:HIS378
|
4.0
|
15.8
|
1.0
|
CA
|
A:LYS374
|
4.0
|
12.9
|
1.0
|
CA
|
A:PHE377
|
4.0
|
14.6
|
1.0
|
CE2
|
A:TRP309
|
4.1
|
16.7
|
1.0
|
O
|
A:PHE373
|
4.1
|
18.9
|
1.0
|
C
|
A:PHE377
|
4.1
|
18.0
|
1.0
|
C
|
A:LYS374
|
4.2
|
15.2
|
1.0
|
CA
|
A:HIS378
|
4.2
|
13.4
|
1.0
|
CA
|
A:GLY375
|
4.2
|
16.5
|
1.0
|
HH12
|
A:ARG63
|
4.3
|
33.1
|
1.0
|
H
|
A:LEU379
|
4.3
|
17.6
|
1.0
|
NH1
|
A:ARG63
|
4.4
|
27.6
|
1.0
|
CG
|
A:LYS374
|
4.5
|
15.0
|
1.0
|
HG2
|
A:LYS374
|
4.6
|
18.0
|
1.0
|
HA3
|
A:GLY375
|
4.6
|
19.8
|
1.0
|
CG
|
A:PHE377
|
4.7
|
15.0
|
1.0
|
CD2
|
A:PHE377
|
4.7
|
16.9
|
1.0
|
O
|
A:HOH668
|
4.7
|
15.7
|
1.0
|
NE2
|
A:HIS378
|
4.7
|
17.4
|
1.0
|
HB3
|
A:HIS378
|
4.8
|
16.7
|
1.0
|
CB
|
A:LYS374
|
4.8
|
15.6
|
1.0
|
HB3
|
A:TRP310
|
4.8
|
14.5
|
1.0
|
HD3
|
A:ARG63
|
4.9
|
19.1
|
1.0
|
CD1
|
A:TRP309
|
4.9
|
14.1
|
1.0
|
HA
|
A:HIS378
|
4.9
|
16.0
|
1.0
|
N
|
A:PRO376
|
4.9
|
14.5
|
1.0
|
C
|
A:PRO376
|
4.9
|
16.3
|
1.0
|
O2
|
A:PO4501
|
5.0
|
48.4
|
1.0
|
C
|
A:PHE373
|
5.0
|
20.5
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 8bs0
Go back to
Chlorine Binding Sites List in 8bs0
Chlorine binding site 2 out
of 2 in the Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 80 Mpa Helium Gas Pressure in A Sapphire Capillary
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Room-Temperature Structure of Pedobacter Heparinus N-Acetylglucosamine 2-Epimerase at 80 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:19.4
occ:1.00
|
H
|
B:HIS378
|
2.5
|
20.8
|
1.0
|
H
|
B:GLY375
|
2.6
|
23.3
|
1.0
|
HD2
|
B:HIS378
|
2.6
|
20.0
|
1.0
|
HB3
|
B:PHE377
|
2.8
|
21.8
|
1.0
|
HE1
|
B:TRP309
|
2.8
|
23.2
|
1.0
|
O
|
B:HOH669
|
3.0
|
16.8
|
1.0
|
HZ2
|
B:TRP309
|
3.0
|
18.2
|
1.0
|
O
|
B:HOH645
|
3.1
|
24.8
|
1.0
|
HA
|
B:LYS374
|
3.2
|
17.1
|
1.0
|
H
|
B:PHE377
|
3.2
|
24.7
|
1.0
|
HB2
|
B:HIS378
|
3.3
|
19.3
|
1.0
|
N
|
B:HIS378
|
3.3
|
17.4
|
1.0
|
O
|
B:GLY375
|
3.4
|
19.4
|
1.0
|
N
|
B:GLY375
|
3.4
|
19.5
|
1.0
|
CD2
|
B:HIS378
|
3.4
|
16.7
|
1.0
|
NE1
|
B:TRP309
|
3.5
|
19.3
|
1.0
|
CB
|
B:PHE377
|
3.7
|
18.2
|
1.0
|
HG3
|
B:LYS374
|
3.7
|
16.8
|
1.0
|
CZ2
|
B:TRP309
|
3.8
|
15.2
|
1.0
|
N
|
B:PHE377
|
3.8
|
20.6
|
1.0
|
CB
|
B:HIS378
|
4.0
|
16.1
|
1.0
|
HD2
|
B:PHE377
|
4.0
|
22.9
|
1.0
|
CE2
|
B:TRP309
|
4.0
|
18.6
|
1.0
|
C
|
B:GLY375
|
4.0
|
16.8
|
1.0
|
CA
|
B:LYS374
|
4.0
|
14.3
|
1.0
|
CG
|
B:HIS378
|
4.0
|
18.0
|
1.0
|
HB2
|
B:PHE377
|
4.0
|
21.8
|
1.0
|
CA
|
B:PHE377
|
4.1
|
19.6
|
1.0
|
O
|
B:PHE373
|
4.1
|
20.4
|
1.0
|
C
|
B:PHE377
|
4.2
|
15.7
|
1.0
|
HH11
|
B:ARG63
|
4.2
|
35.2
|
1.0
|
C
|
B:LYS374
|
4.2
|
16.1
|
1.0
|
CA
|
B:HIS378
|
4.2
|
15.4
|
1.0
|
CA
|
B:GLY375
|
4.3
|
15.7
|
1.0
|
H
|
B:LEU379
|
4.3
|
21.5
|
1.0
|
HH12
|
B:ARG63
|
4.4
|
35.2
|
1.0
|
NH1
|
B:ARG63
|
4.5
|
29.3
|
1.0
|
CG
|
B:LYS374
|
4.5
|
14.0
|
1.0
|
NE2
|
B:HIS378
|
4.6
|
20.9
|
1.0
|
HA3
|
B:GLY375
|
4.6
|
18.9
|
1.0
|
CD2
|
B:PHE377
|
4.7
|
19.1
|
1.0
|
CG
|
B:PHE377
|
4.7
|
15.7
|
1.0
|
O
|
B:HOH622
|
4.7
|
19.2
|
1.0
|
CD1
|
B:TRP309
|
4.7
|
16.6
|
1.0
|
HB3
|
B:TRP310
|
4.7
|
21.4
|
1.0
|
CB
|
B:LYS374
|
4.8
|
17.0
|
1.0
|
HG2
|
B:LYS374
|
4.8
|
16.8
|
1.0
|
HB3
|
B:HIS378
|
4.8
|
19.3
|
1.0
|
HE2
|
B:HIS378
|
4.9
|
25.1
|
1.0
|
HA
|
B:HIS378
|
4.9
|
18.4
|
1.0
|
HD3
|
B:ARG63
|
4.9
|
24.3
|
1.0
|
C
|
B:PRO376
|
5.0
|
16.5
|
1.0
|
N
|
B:PRO376
|
5.0
|
20.7
|
1.0
|
C
|
B:PHE373
|
5.0
|
19.9
|
1.0
|
HB2
|
B:LYS374
|
5.0
|
20.4
|
1.0
|
|
Reference:
J.Lieske,
S.Saouane,
S.Guenther,
P.Y.A.Reinke,
S.Falke,
W.Ewert,
J.Meyer,
T.Pakendorf,
B.Reime,
A.Burkhardt,
E.Crosas,
J.Hakanpaeae,
K.Stachnik,
J.Sieg,
M.Rarey,
M.Assmann,
H.Zaun,
J.Kuballa,
H.N.Chapman,
A.Meents.
High-Pressure Macromolecular Crystallography to Explore the Conformational Space of Proteins To Be Published.
Page generated: Tue Jul 30 07:23:23 2024
|