Chlorine in PDB 8byh: Crystal Structure of Trmd Domain From Calditerrivibrio Nitroreducens in Complex with S-Adenosyl-L-Methionine

The structure of Crystal Structure of Trmd Domain From Calditerrivibrio Nitroreducens in Complex with S-Adenosyl-L-Methionine, PDB code: 8byh was solved by A.Kluza, I.Lewandowska, J.Sulkowska, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.83 / 2.19
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	85.39, 85.39, 210.71, 90, 90, 90
R / Rfree (%)	16.7 / 20.9

The binding sites of Chlorine atom in the Crystal Structure of Trmd Domain From Calditerrivibrio Nitroreducens in Complex with S-Adenosyl-L-Methionine (pdb code 8byh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Trmd Domain From Calditerrivibrio Nitroreducens in Complex with S-Adenosyl-L-Methionine, PDB code: 8byh:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of Trmd Domain From Calditerrivibrio Nitroreducens in Complex with S-Adenosyl-L-Methionine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Trmd Domain From Calditerrivibrio Nitroreducens in Complex with S-Adenosyl-L-Methionine within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl604 b:62.8 occ:1.00 NH1 A:ARG122 3.8 40.4 1.0 CA A:GLU128 3.8 31.5 1.0 N A:MET129 3.9 36.6 1.0 C A:GLU128 3.9 35.9 1.0 CD A:ARG122 4.1 25.7 1.0 CG A:MET129 4.2 39.4 1.0 N A:GLU128 4.3 26.6 1.0 O A:HOH730 4.3 36.6 1.0 CB A:ALA126 4.4 29.1 1.0 CE A:MET129 4.5 34.4 1.0 O A:ASP127 4.6 34.3 1.0 C A:ASP127 4.6 31.2 1.0 O A:GLU128 4.6 29.2 1.0 CB A:MET129 4.6 31.0 1.0 O A:ALA126 4.7 36.9 1.0 CZ A:ARG122 4.7 36.3 1.0 O A:HOH767 4.8 48.8 1.0 O A:HOH880 4.8 52.0 1.0 NE A:ARG122 4.9 36.5 1.0 CA A:MET129 4.9 32.9 1.0 C A:ALA126 5.0 34.0 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of Trmd Domain From Calditerrivibrio Nitroreducens in Complex with S-Adenosyl-L-Methionine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Trmd Domain From Calditerrivibrio Nitroreducens in Complex with S-Adenosyl-L-Methionine within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl301 b:54.3 occ:1.00 NH1 B:ARG122 3.4 29.8 1.0 O B:HOH458 3.5 49.4 1.0 CD B:ARG122 3.9 23.9 1.0 CA B:GLU128 3.9 30.5 1.0 CB B:ALA126 4.0 27.1 1.0 C B:GLU128 4.1 28.0 1.0 N B:GLU128 4.2 22.6 1.0 N B:MET129 4.2 29.4 1.0 CG B:MET129 4.3 37.1 1.0 O B:ALA126 4.3 31.5 1.0 CZ B:ARG122 4.4 29.3 1.0 NE B:ARG122 4.6 28.4 1.0 C B:ASP127 4.6 32.7 1.0 CE B:MET129 4.6 27.1 1.0 C B:ALA126 4.7 38.0 1.0 O B:ASP127 4.7 26.7 1.0 O B:GLU128 4.7 29.5 1.0 O B:HOH572 4.7 56.5 1.0 CB B:MET129 4.9 27.5 1.0 O B:HOH517 4.9 36.3 1.0 CA B:ALA126 5.0 34.6 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of Trmd Domain From Calditerrivibrio Nitroreducens in Complex with S-Adenosyl-L-Methionine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Trmd Domain From Calditerrivibrio Nitroreducens in Complex with S-Adenosyl-L-Methionine within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl302 b:86.6 occ:0.50 O B:LEU224 3.5 57.8 1.0 O B:LYS226 3.9 51.4 1.0 O B:ARG225 3.9 65.4 1.0 O B:HOH478 4.0 58.9 1.0 C B:ARG225 4.2 61.8 1.0 C B:LYS226 4.3 49.0 1.0 N B:SER227 4.5 51.0 1.0 CA B:ARG225 4.5 59.3 1.0 CA B:SER227 4.6 54.9 1.0 C B:LEU224 4.6 54.4 1.0 N B:LYS226 4.8 51.9 1.0

J.Sulkowska, A.Kluza, I.Lewandowska, J.Sulkowska. N/A N/A.