Chlorine in PDB 8c8j: Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp

Enzymatic activity of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp

All present enzymatic activity of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp:
2.7.7.49;

Protein crystallography data

The structure of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp, PDB code: 8c8j was solved by C.E.Nichols, T.B.Walpole, E.Baldwin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.66 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 119.349, 84.528, 107.938, 90, 91.48, 90
R / Rfree (%) 20.8 / 23.8

Other elements in 8c8j:

The structure of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp (pdb code 8c8j). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp, PDB code: 8c8j:

Chlorine binding site 1 out of 1 in 8c8j

Go back to Chlorine Binding Sites List in 8c8j
Chlorine binding site 1 out of 1 in the Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1122

b:93.0
occ:1.00
 OG1 A:THR973 2.9 52.2 1.0
O A:HOH1394 2.9 78.3 1.0
N A:ASP1009 3.1 57.5 1.0
CB A:ASP1009 3.4 59.9 1.0
CA A:THR973 3.8 49.9 1.0
CA A:ASP1009 3.8 57.9 1.0
N A:THR973 3.9 50.1 1.0
CB A:THR973 3.9 51.2 1.0
CA A:ILE1008 3.9 57.6 1.0
C A:ILE1008 3.9 57.4 1.0
O A:LYS1007 4.0 57.6 1.0
C A:LYS972 4.3 51.0 1.0
CB A:LYS972 4.6 54.9 1.0
CG2 A:ILE1008 4.7 58.2 1.0
CG A:LYS972 4.7 60.0 1.0
O A:LYS972 4.7 50.8 1.0
CG2 A:THR973 4.7 51.1 1.0
CG A:ASP1009 4.8 62.1 1.0
OD2 A:ASP1012 4.8 54.9 1.0
C A:LYS1007 4.8 58.1 1.0
N A:ILE1008 4.8 57.8 1.0
CB A:ILE1008 4.8 57.7 1.0
O2 A:EDO1119 4.9 85.9 1.0
CD1 A:ILE1008 4.9 58.8 1.0

Reference:

C.E.Nichols, T.B.Walpole, E.Baldwin. Long Interspersed Nuclear Element 1 (Line-1) Reverse Transcriptase Ternary Complex with Hybrid Duplex and Dttp To Be Published.
Page generated: Tue Jul 30 07:47:26 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy