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Chlorine in PDB 8cam: Evernimicin Bound to the 50S Subunit

Other elements in 8cam:

The structure of Evernimicin Bound to the 50S Subunit also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Magnesium (Mg) 246 atoms
Potassium (K) 72 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Evernimicin Bound to the 50S Subunit (pdb code 8cam). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Evernimicin Bound to the 50S Subunit, PDB code: 8cam:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8cam

Go back to Chlorine Binding Sites List in 8cam
Chlorine binding site 1 out of 2 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl3307

b:122.0
occ:1.00
CL1 a:6O13307 0.0 122.0 1.0
C02 a:6O13307 1.7 115.5 1.0
C01 a:6O13307 2.7 110.9 1.0
C03 a:6O13307 2.7 116.3 1.0
O03 a:6O13307 2.7 118.2 1.0
O01 a:6O13307 2.9 110.4 1.0
C07 a:6O13307 4.0 119.4 1.0
C06 a:6O13307 4.0 109.8 1.0
C04 a:6O13307 4.0 115.0 1.0
NH2 l:ARG51 4.5 59.8 1.0
C05 a:6O13307 4.5 110.4 1.0
O72 a:6O13307 4.5 161.6 1.0
NE l:ARG51 4.7 54.2 1.0
NH1 l:ARG50 4.8 52.7 1.0
CZ l:ARG51 4.9 56.7 1.0
OE2 l:GLU47 4.9 54.0 1.0

Chlorine binding site 2 out of 2 in 8cam

Go back to Chlorine Binding Sites List in 8cam
Chlorine binding site 2 out of 2 in the Evernimicin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Evernimicin Bound to the 50S Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl3307

b:108.5
occ:1.00
CL2 a:6O13307 0.0 108.5 1.0
C06 a:6O13307 1.7 109.8 1.0
C01 a:6O13307 2.7 110.9 1.0
C05 a:6O13307 2.7 110.4 1.0
O01 a:6O13307 2.9 110.4 1.0
C08 a:6O13307 3.0 109.9 1.0
NH1 l:ARG50 3.7 52.7 1.0
C02 a:6O13307 4.0 115.5 1.0
NH2 l:ARG59 4.0 129.5 1.0
CG l:ARG51 4.0 49.0 1.0
C04 a:6O13307 4.1 115.0 1.0
CA l:ARG51 4.1 44.5 1.0
O l:ARG51 4.2 43.1 1.0
CB l:ARG51 4.3 45.9 1.0
CG2 l:THR54 4.4 54.8 1.0
CB l:THR54 4.4 54.5 1.0
O72 a:6O13307 4.5 161.6 1.0
CZ l:ARG50 4.5 52.3 1.0
NH2 l:ARG50 4.5 54.0 1.0
C68 a:6O13307 4.6 159.8 1.0
C03 a:6O13307 4.6 116.3 1.0
C l:ARG51 4.7 42.9 1.0
CZ l:ARG59 4.9 128.8 1.0
CD l:ARG51 5.0 51.0 1.0

Reference:

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.
Page generated: Thu Dec 28 03:08:21 2023

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