Chlorine in PDB 8cgd: Clindamycin Bound to the 50S Subunit

The structure of Clindamycin Bound to the 50S Subunit also contains other interesting chemical elements:

Potassium	(K)	85 atoms
Magnesium	(Mg)	254 atoms
Zinc	(Zn)	2 atoms

The binding sites of Chlorine atom in the Clindamycin Bound to the 50S Subunit (pdb code 8cgd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Clindamycin Bound to the 50S Subunit, PDB code: 8cgd:

Chlorine binding site 1 out of 1 in the Clindamycin Bound to the 50S Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Clindamycin Bound to the 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Cl3002 b:44.4 occ:1.00 CL1 a:CLY3002 0.0 44.4 1.0 C8 a:CLY3002 1.8 41.5 1.0 C9 a:CLY3002 2.7 42.1 1.0 C7 a:CLY3002 2.7 36.9 1.0 N1 a:CLY3002 3.0 34.7 1.0 C4 a:CLY3002 3.2 35.9 1.0 O5 a:CLY3002 3.7 36.8 1.0 N3 a:U2506 3.8 38.9 1.0 O4 a:U2506 3.8 43.0 1.0 C1' a:G2505 3.9 28.0 1.0 C4 a:U2506 3.9 38.7 1.0 C6 a:CLY3002 3.9 46.0 1.0 C10 a:CLY3002 4.1 34.3 1.0 O4' a:G2505 4.1 27.9 1.0 S1 a:CLY3002 4.4 42.5 1.0 O2' a:G2505 4.4 29.1 1.0 N3 a:G2505 4.4 30.3 1.0 C2 a:U2506 4.5 38.5 1.0 C12 a:CLY3002 4.6 33.3 1.0 C3 a:CLY3002 4.6 36.3 1.0 C5 a:CLY3002 4.6 37.7 1.0 C2' a:G2505 4.7 27.7 1.0 N9 a:G2505 4.7 27.6 1.0 O8 a:CLY3002 4.7 35.4 1.0 C5 a:U2506 4.7 38.0 1.0 C11 a:CLY3002 4.9 34.2 1.0 O2 a:U2506 4.9 39.4 1.0 C4 a:G2505 4.9 27.7 1.0

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.