Chlorine in PDB 8cj8: Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate

Enzymatic activity of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate

All present enzymatic activity of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate:
4.1.1.31;

Protein crystallography data

The structure of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate, PDB code: 8cj8 was solved by S.Haesaerts, R.Loris, P.B.Larsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.72 / 3.49
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 245.38, 245.38, 397.73, 90, 90, 90
R / Rfree (%) 24.4 / 27.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate (pdb code 8cj8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate, PDB code: 8cj8:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8cj8

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Chlorine binding site 1 out of 4 in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:167.0
occ:1.00
 NH2 A:ARG238 3.4 176.7 1.0
NH1 A:ARG238 3.9 175.5 1.0
CE B:LYS359 4.1 190.9 1.0
CD B:LYS359 4.1 189.1 1.0
CG B:LYS359 4.1 188.8 1.0
CZ A:ARG238 4.1 170.9 1.0
CG A:GLN234 4.2 135.6 1.0
CB A:GLN234 4.2 132.7 1.0
OD2 A:ASP302 4.4 131.3 1.0
CD1 A:LEU306 4.6 112.9 1.0
CD1 A:LEU389 4.7 139.9 1.0
CG A:ASP302 4.7 128.2 1.0
CD A:GLN234 4.7 139.3 1.0
CB B:LYS359 4.8 186.5 1.0
NE2 A:GLN234 4.8 141.6 1.0
CD2 A:LEU389 4.9 141.3 1.0
CG A:LEU389 5.0 140.2 1.0

Chlorine binding site 2 out of 4 in 8cj8

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Chlorine binding site 2 out of 4 in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1004

b:104.8
occ:1.00
 NH2 A:ARG769 3.5 203.2 1.0
CD A:ARG637 3.8 165.9 0.5
NH1 A:ARG755 3.9 181.8 1.0
OD1 A:ASP599 4.0 192.5 1.0
CD1 A:ILE771 4.1 161.7 1.0
CG1 A:ILE771 4.1 157.1 1.0
NH2 A:ARG452 4.1 121.9 1.0
NH2 A:ARG755 4.2 184.7 1.0
CG A:ARG637 4.3 168.5 0.5
CZ A:ARG769 4.5 201.2 1.0
CZ A:ARG755 4.5 183.8 1.0
NE A:ARG769 4.6 190.3 1.0
CB A:ALA770 4.6 143.5 1.0
NE A:ARG637 4.6 164.7 0.5
N A:ILE771 4.7 143.6 1.0
CG A:ASP599 4.8 187.5 1.0
NE A:ARG637 4.8 164.5 0.5
OD2 A:ASP599 4.9 187.0 1.0
CB A:ILE771 4.9 152.0 1.0
NH1 A:ARG452 4.9 120.3 1.0
CZ A:ARG452 5.0 118.0 1.0

Chlorine binding site 3 out of 4 in 8cj8

Go back to Chlorine Binding Sites List in 8cj8
Chlorine binding site 3 out of 4 in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1003

b:128.1
occ:1.00
 NH2 B:ARG769 3.7 194.0 1.0
NH2 B:ARG755 3.8 191.0 1.0
CD B:ARG637 3.8 185.7 0.5
NH1 B:ARG755 4.1 190.9 1.0
CD B:ARG637 4.1 186.4 0.5
CG B:ARG637 4.3 188.8 0.5
CG1 B:ILE771 4.3 199.7 1.0
OD2 B:ASP599 4.4 184.5 1.0
CZ B:ARG755 4.4 191.4 1.0
CG B:ARG637 4.4 188.8 0.5
CD1 B:ILE771 4.5 205.8 1.0
NH2 B:ARG452 4.5 169.1 1.0
OD1 B:ASP599 4.6 183.7 1.0
CB B:ALA770 4.6 180.1 1.0
CZ B:ARG769 4.7 191.7 1.0
CG B:ASP599 4.9 183.1 1.0
N B:ILE771 4.9 182.7 1.0
NE B:ARG769 4.9 184.0 1.0
NH1 B:ARG452 4.9 164.5 1.0
NE B:ARG637 5.0 182.9 0.5

Chlorine binding site 4 out of 4 in 8cj8

Go back to Chlorine Binding Sites List in 8cj8
Chlorine binding site 4 out of 4 in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1003

b:96.6
occ:1.00
 NH2 C:ARG769 3.4 150.9 1.0
CD C:ARG637 3.8 99.0 0.5
NH2 C:ARG755 3.8 175.1 1.0
NH1 C:ARG755 3.9 174.9 1.0
CG1 C:ILE771 4.2 102.9 1.0
CD1 C:ILE771 4.2 112.0 1.0
CG C:ARG637 4.3 106.2 0.5
CZ C:ARG755 4.3 176.9 1.0
CZ C:ARG769 4.5 148.7 1.0
NH2 C:ARG452 4.5 97.2 1.0
NE C:ARG637 4.7 96.1 0.5
NE C:ARG769 4.7 135.9 1.0
NE C:ARG637 4.8 95.5 0.5
N C:ILE771 4.8 97.9 1.0
CB C:ILE771 4.9 93.1 1.0
OD1 C:ASP599 4.9 124.8 1.0
NH1 C:ARG452 4.9 76.1 1.0
CB C:ALA770 5.0 101.8 1.0

Reference:

T.J.Meyer, J.Sheng, S.Haesaerts, K.Frausto, S.O'leary, R.Loris, P.B.Larsen. Amino Acid Changes That Deregulate Phosphoenolpyruvate Carboxylase in Plants To Be Published.
Page generated: Tue Jul 30 07:59:04 2024

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