Chlorine in PDB 8cj8: Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate

Enzymatic activity of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate

All present enzymatic activity of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate:
4.1.1.31;

Protein crystallography data

The structure of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate, PDB code: 8cj8 was solved by S.Haesaerts, R.Loris, P.B.Larsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.72 / 3.49
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 245.38, 245.38, 397.73, 90, 90, 90
R / Rfree (%) 24.4 / 27.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate (pdb code 8cj8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate, PDB code: 8cj8:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8cj8

Go back to Chlorine Binding Sites List in 8cj8
Chlorine binding site 1 out of 4 in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:167.0
occ:1.00
 NH2 A:ARG238 3.4 176.7 1.0
NH1 A:ARG238 3.9 175.5 1.0
CE B:LYS359 4.1 190.9 1.0
CD B:LYS359 4.1 189.1 1.0
CG B:LYS359 4.1 188.8 1.0
CZ A:ARG238 4.1 170.9 1.0
CG A:GLN234 4.2 135.6 1.0
CB A:GLN234 4.2 132.7 1.0
OD2 A:ASP302 4.4 131.3 1.0
CD1 A:LEU306 4.6 112.9 1.0
CD1 A:LEU389 4.7 139.9 1.0
CG A:ASP302 4.7 128.2 1.0
CD A:GLN234 4.7 139.3 1.0
CB B:LYS359 4.8 186.5 1.0
NE2 A:GLN234 4.8 141.6 1.0
CD2 A:LEU389 4.9 141.3 1.0
CG A:LEU389 5.0 140.2 1.0

Chlorine binding site 2 out of 4 in 8cj8

Go back to Chlorine Binding Sites List in 8cj8
Chlorine binding site 2 out of 4 in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1004

b:104.8
occ:1.00
 NH2 A:ARG769 3.5 203.2 1.0
CD A:ARG637 3.8 165.9 0.5
NH1 A:ARG755 3.9 181.8 1.0
OD1 A:ASP599 4.0 192.5 1.0
CD1 A:ILE771 4.1 161.7 1.0
CG1 A:ILE771 4.1 157.1 1.0
NH2 A:ARG452 4.1 121.9 1.0
NH2 A:ARG755 4.2 184.7 1.0
CG A:ARG637 4.3 168.5 0.5
CZ A:ARG769 4.5 201.2 1.0
CZ A:ARG755 4.5 183.8 1.0
NE A:ARG769 4.6 190.3 1.0
CB A:ALA770 4.6 143.5 1.0
NE A:ARG637 4.6 164.7 0.5
N A:ILE771 4.7 143.6 1.0
CG A:ASP599 4.8 187.5 1.0
NE A:ARG637 4.8 164.5 0.5
OD2 A:ASP599 4.9 187.0 1.0
CB A:ILE771 4.9 152.0 1.0
NH1 A:ARG452 4.9 120.3 1.0
CZ A:ARG452 5.0 118.0 1.0

Chlorine binding site 3 out of 4 in 8cj8

Go back to Chlorine Binding Sites List in 8cj8
Chlorine binding site 3 out of 4 in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1003

b:128.1
occ:1.00
 NH2 B:ARG769 3.7 194.0 1.0
NH2 B:ARG755 3.8 191.0 1.0
CD B:ARG637 3.8 185.7 0.5
NH1 B:ARG755 4.1 190.9 1.0
CD B:ARG637 4.1 186.4 0.5
CG B:ARG637 4.3 188.8 0.5
CG1 B:ILE771 4.3 199.7 1.0
OD2 B:ASP599 4.4 184.5 1.0
CZ B:ARG755 4.4 191.4 1.0
CG B:ARG637 4.4 188.8 0.5
CD1 B:ILE771 4.5 205.8 1.0
NH2 B:ARG452 4.5 169.1 1.0
OD1 B:ASP599 4.6 183.7 1.0
CB B:ALA770 4.6 180.1 1.0
CZ B:ARG769 4.7 191.7 1.0
CG B:ASP599 4.9 183.1 1.0
N B:ILE771 4.9 182.7 1.0
NE B:ARG769 4.9 184.0 1.0
NH1 B:ARG452 4.9 164.5 1.0
NE B:ARG637 5.0 182.9 0.5

Chlorine binding site 4 out of 4 in 8cj8

Go back to Chlorine Binding Sites List in 8cj8
Chlorine binding site 4 out of 4 in the Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Arabidopsis Thaliana Phosphoenolpyruvate Carboxylase PPC1 Mutant A651V in Complex with L-Malate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1003

b:96.6
occ:1.00
 NH2 C:ARG769 3.4 150.9 1.0
CD C:ARG637 3.8 99.0 0.5
NH2 C:ARG755 3.8 175.1 1.0
NH1 C:ARG755 3.9 174.9 1.0
CG1 C:ILE771 4.2 102.9 1.0
CD1 C:ILE771 4.2 112.0 1.0
CG C:ARG637 4.3 106.2 0.5
CZ C:ARG755 4.3 176.9 1.0
CZ C:ARG769 4.5 148.7 1.0
NH2 C:ARG452 4.5 97.2 1.0
NE C:ARG637 4.7 96.1 0.5
NE C:ARG769 4.7 135.9 1.0
NE C:ARG637 4.8 95.5 0.5
N C:ILE771 4.8 97.9 1.0
CB C:ILE771 4.9 93.1 1.0
OD1 C:ASP599 4.9 124.8 1.0
NH1 C:ARG452 4.9 76.1 1.0
CB C:ALA770 5.0 101.8 1.0

Reference:

T.J.Meyer, J.Sheng, S.Haesaerts, K.Frausto, S.O'leary, R.Loris, P.B.Larsen. Amino Acid Changes That Deregulate Phosphoenolpyruvate Carboxylase in Plants To Be Published.
Page generated: Tue Jul 30 07:59:04 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy